Information report for KN539082.1_FGP007
Gene Details
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Functional Annotation
- Refseq: XP_015640521.1 — origin recognition complex subunit 4 isoform X1
- TrEMBL: A0A0D3GBQ2 — A0A0D3GBQ2_9ORYZ; Uncharacterized protein
- STRING: OBART05G28300.1 — (Oryza barthii)
- GO:0006334 — Biological Process — nucleosome assembly
- GO:0009294 — Biological Process — DNA mediated transformation
- GO:0009944 — Biological Process — polarity specification of adaxial/abaxial axis
- GO:0010162 — Biological Process — seed dormancy process
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0000786 — Cellular Component — nucleosome
- GO:0005618 — Cellular Component — cell wall
- GO:0005730 — Cellular Component — nucleolus
- GO:0005739 — Cellular Component — mitochondrion
- GO:0005774 — Cellular Component — vacuolar membrane
- GO:0005829 — Cellular Component — cytosol
- GO:0003677 — Molecular Function — DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi2g14120.4.p
- Oryza sativa: LOC_Os05g51830, OsHDT1;HDT701
- Populus trichocarpa: Potri.006G116500.4
- Saccharum spontaneum: Sspon.07G0003330-3D
- Setaria viridis: Sevir.5G427700.2.p
- Solanum tuberosum: PGSC0003DMP400014739
Sequences
CDS Sequence:
- >KN539082.1_FGP007|Oryza_longistaminata|C2H2|KN539082.1_FGP007
ATGCATCTGGATGCTTCTTACTTCTCACTTGCTCCAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCACCTCCGCCACCGCCGCTCGAGGACGGGGACGAGGACGACCGCCCAAGAAAGCTTCCTCCTCCGCGCCGCCTCAAAAGCGCGGACCCGGCCGACCCCGCAAGAATACAGCCCTGTTTCCGGTTCCTGTGCTTGAGGCGAAGCCTGGGCGCGGGCGACCCCGGAAGAACCCTCTCCCTGTGGCTTCCTCCACCTCCTCTGCTGCTGCTGCTACGGCGTTGAGCCTGAGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTACCCCGTTGAGACTGGGAGTGAAGCGGGGACCTGGGAGACCGCGCAAGAATGCCACTGCTACGCCGTTGAGCCTGGGAGTGAAGCGGGGACCTGGGAGGCCGCGCAAGAATGCTGCTGCTGCTGCTGCCTCTCCCGTTGCTCCGCCGCCTGCATCTCCACTGAAGCGGGGTGTTGGACGCCCAAGGAAGAACGCCACTCCTCTAGTCAAGCCTGGACCTGGGAGGCCGTCTGGATTCAAACGTGGACCTGGCCGCCCTCGCAAGAATGCCACTTCTCCTGTGCTGTCAGTGCCACCCACTGCTGCTGCTGTGTTGGGAGTGAAGCGTGGCCGTGGGCGCCCTAGAAAGGATAAACCATTGCAATCTTGGTCTGTGCTCTCTGGCGGTGCTGCAATGACTAAGAGAGGGCCTGGGAGGCCAAGAAAGAAGAGGCCACTGGAAGCTGGAGGTGTTGTGGCAGCACAGGTAGACACTGCAGATGGAGGTGAGGCTGGAGCCGTTCAAAATGGAGGTGAAGTTAGGTGTCTGCTCTCTGATGGTGCTTCTTCAATGGAGAACAGAGGGCCTGGGAGTCCTAGGAAGGAGGTGCTATTGGAAAATGAACCTACAGTTTCTACATTGGTGGGAAAGAGAGGCCGTGGCCGTCCAAAAAAGGAGAAACCATCAGCAGCAAGGCTTGCTGAAACTGGAGATGCTAAATCAATGGGGATCAAGAGAGGTCGTGGAAGACCAAGAAAGGACAGTTCCTTTCAAGCTGTGTTTGCAGAAGCTGCAGGTCTTGAAGTCAAGCCTGGACAGACTGTCAAATGTGAGCCTGAAGATGAACGCTTTTTGCACCTTTCTCAGGCTGCTCTTGGGGAATCAAAGAAAGGATCTGACAATGCAGTAATGTATGTTAAAACTGATGATCAAAAGCTAGTCATTGGAACCCTCTCAGCTGACAAGTTCCCTCAAATCCAGTTTGATTTGGTCTTTGACAAAGAGTTTGAGCTGTCACACACTTCAAAGACTGCTAGTGTGTTCTTTTCTGGCTACAAAATGAAGAGGAGGAAGAAAAGATCATTCCAGCTCCCAGGGCAAATGGATTCTTCTGAGGATGATTCCAGCGAAGATGATGAGGATGAGAGTGACGAGGAAGAAACTCCCAAGAAGCCAGAGACTGGAAAGAGGAAAGTAGCTGAAATTGTGTTGAAGACACCTTCGTCTGATAAGAAGGCAAAGATTGCTACACCATCAGGCCAGAAGACAGGTGACAAGAAGGGTGTCCATGTAGCAACTCCACATCCGGCAAAGCAGGCTAGCAAGACCCCCGTGAATGACAAGTCAAAGGAGAAGTCCCCAAAATCCGGTGGTGGGTCAATTTCTTGCAAGTCATGCAGCAAGACGTTCAACAGTGAAATGGCTCTGCAATCTCACTCGAAGGCCAAGCACCCCGCCAAGTGA
Protein Sequence:
- >KN539082.1_FGP007|Oryza_longistaminata|C2H2|KN539082.1_FGP007
MHLDASYFSLAPDLLDLVQMILRALKELPDPIISSRRAIAKYISDNFSGLPSHHDALLTVHLRRLRSQGLLLMSGHSYLLSTSATAARGRGRGRPPKKASSSAPPQKRGPGRPRKNTALFPVPVLEAKPGRGRPRKNPLPVASSTSSAAAATALSLRVKRGPGRPRKNAAATPLRLGVKRGPGRPRKNATATPLSLGVKRGPGRPRKNAAAAAASPVAPPPASPLKRGVGRPRKNATPLVKPGPGRPSGFKRGPGRPRKNATSPVLSVPPTAAAVLGVKRGRGRPRKDKPLQSWSVLSGGAAMTKRGPGRPRKKRPLEAGGVVAAQVDTADGGEAGAVQNGGEVRCLLSDGASSMENRGPGSPRKEVLLENEPTVSTLVGKRGRGRPKKEKPSAARLAETGDAKSMGIKRGRGRPRKDSSFQAVFAEAAGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKTASVFFSGYKMKRRKKRSFQLPGQMDSSEDDSSEDDEDESDEEETPKKPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHPAKQASKTPVNDKSKEKSPKSGGGSISCKSCSKTFNSEMALQSHSKAKHPAK