Information report for KHN28890.1
Gene Details
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Functional Annotation
- Refseq: XP_028243304.1 — zinc finger protein SHOOT GRAVITROPISM 5-like
- Swissprot: F4IPE3 — IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
- TrEMBL: A0A0B2R5J8 — A0A0B2R5J8_GLYSO; Protein SHOOT GRAVITROPISM 5
- STRING: GLYMA08G09760.1 — (Glycine max)
- GO:0009630 — Biological Process — gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043621 — Molecular Function — protein self-association
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_23022
- Cicer arietinum: XP_004504607.1
- Citrus sinensis: orange1.1g014184m
- Glycine max: Glyma.08G092300.2.p, Glyma.08G092300.1.p, Glyma.05G137000.1.p, Glyma.05G137000, Glyma.05G137000.2.p
- Lotus japonicus: Lj4g3v2401010.1
- Manihot esculenta: Manes.15G139200.1.p, MANES_15G139200, Manes.17G090100.1.p, MANES_17G090100
- Populus trichocarpa: Potri.008G140400.1
- Vitis vinifera: VIT_01s0011g06400
Sequences
CDS Sequence:
- >KHN28890.1|Glycine_soja|C2H2|KHN28890.1
ATGTTAGACAACAACAATTGCAGTGCTTCTAATTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCAACCACCTTGCTGGAATCTGACAGATACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCATGGAAGCTGCTAAAGAGGGAAACAGCACAAGGGGGGCATCAGAAGAAGAGGGTGTTTGTGTGCCCTGAGCCAACTTGTTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGTTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCTCACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGTTACAAGCACTTCAACCAGCATGCTCTTCAAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCAGTACTGCCAAAACCAGCTGAACAACAACAACAACCAGCAACAACAACAGTCTTATTAACTTCAGAGATACACGGTAACAAGTCCACTACCTCGCATAACTTAGAACTTCAGCTCTTACCCTCCTCAACAAACTCTCAAGCAAAACGAAATACAAAGGAAAACTATGGCTTGAAACTTTCAATAGGCTCATGTAGTAACGACAAAGGGAATAGTAGTGAACCACCAGAGAGAGCATGTTCAGAAGCACATAGGAGCCCACCTGAAAGGAATAATAATAATAATAATAACAATGTGAGTGACTATTCCACGTTGGAAGTGGCAAGGTTGCAGGAGTTTGCAGGAGAGGAACTCAAGTTGGCCATTGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCCAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTTCAAGGGCTGAAGAGCTGAGAAAGCAAGCCATCAAGAAGATAGGTTCCACTGTTATGGAAATAACATGTCATACTTGCAAGCAACAGTTTCAGTCTTCAACTGTTGGGGTGCCATCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA
Protein Sequence:
- >KHN28890.1|Glycine_soja|C2H2|KHN28890.1
MLDNNNCSASNSGAPSSSDAAFALSENGVANNKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAQGGHQKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPVLPKPAEQQQQPATTTVLLTSEIHGNKSTTSHNLELQLLPSSTNSQAKRNTKENYGLKLSIGSCSNDKGNSSEPPERACSEAHRSPPERNNNNNNNNVSDYSTLEVARLQEFAGEELKLAIAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELSRAEELRKQAIKKIGSTVMEITCHTCKQQFQSSTVGVPSSEETSIVMSYMSSATTEGEAE