Information report for KHN25088.1
Gene Details
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Functional Annotation
- Refseq: XP_028240003.1 — zinc finger protein SHOOT GRAVITROPISM 5-like
- Swissprot: F4IPE3 — IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
- TrEMBL: A0A0B2QZ38 — A0A0B2QZ38_GLYSO; Protein SHOOT GRAVITROPISM 5 isoform A
- STRING: GLYMA07G12170.1 — (Glycine max)
- GO:0009590 — Biological Process — detection of gravity
- GO:0009959 — Biological Process — negative gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010031 — Biological Process — circumnutation
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_39848
- Cicer arietinum: XP_004513329.1
- Citrus sinensis: orange1.1g037502m
- Glycine max: Glyma.07G107500.1.p, Glyma.07G107500, Glyma.07G107500.2.p, Glyma.09G170200.1.p
- Juglans regia: WALNUT_00016577-RA, Jr06_16580
- Lotus japonicus: Lj2g3v0635520.1
- Ricinus communis: 28952.m000016
- Rosa chinensis: RchiOBHm_Chr7g0177741
Sequences
CDS Sequence:
- >KHN25088.1|Glycine_soja|C2H2|KHN25088.1
ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCGGATGCAGAAGTGGTGTCCCTCTCGCCGAAAACGTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGTCATGCCTTGGGTGACCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTTGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCTCATGAATCTCAACCTCTTCAACCATCTGCATGCCTTTCTAGAACAGCTTCAAGCCCAAGTCCTTCAAGTGAGACCAATTTCAGCACAGCTCCATGGCCAACAAGGATGATAATACAAAAGCCATCAGAAACACCCACAATCTTCATGAACAACCCTATTACTGCTATCACCACTGCTGAAACCTCCTCCAAGAGCAACAACAAACTACTCCACCCCAACTTGGATCTTCAACTCTCCACCCCCACCAATAACAACAACTCCAACACCTCCAACACCAACACATCAAATATTGCAAACCCCATTGATAATGCTGCAATATCAGCTAAGAGGGATCATTATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATATGAGTGAGAAGAATGATCAATCAAACAGGAACTCATCAGAGAAGAGCAGCAATAACAGCAACAACATTAATGATCAGAATAATAAGCAGCAGTCCAACAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCAAGGGAGCACTTGAGGATAGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAGCAAGCAAAGAGGCAGATTGAGCTTGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGTGGAACTAGACAAGGCCTACGCTTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACTCTTGCAAACAACAGTTCCAAGCTCGAAATGCAACCACCACCAGCCCCGACGATAATTCTTTGGTGCTGAGCTACGTTTCTTCTGCTATTACCACGGAAGGAGGAGAAGTTGAAAACGATAATATTGCAAAAGATCATGCCAAAGACAACAACTAA
Protein Sequence:
- >KHN25088.1|Glycine_soja|C2H2|KHN25088.1
MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPHESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIQKPSETPTIFMNNPITAITTAETSSKSNNKLLHPNLDLQLSTPTNNNNSNTSNTNTSNIANPIDNAAISAKRDHYHENHSTHLQLSIGSSDMSEKNDQSNRNSSEKSSNNSNNINDQNNKQQSNNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQVELDKAYALKEHAMKQINSTMLQITCHSCKQQFQARNATTTSPDDNSLVLSYVSSAITTEGGEVENDNIAKDHAKDNN