Information report for KHN16112.1
Gene Details
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Functional Annotation
- Refseq: XP_003535336.1 — protein indeterminate-domain 2
- Refseq: XP_028184221.1 — zinc finger protein GAI-ASSOCIATED FACTOR 1-like
- Swissprot: Q9SCQ6 — IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
- TrEMBL: A0A445IMU1 — A0A445IMU1_GLYSO; Protein indeterminate-domain 2
- TrEMBL: I1LBB3 — I1LBB3_SOYBN; Uncharacterized protein
- STRING: GLYMA10G29390.1 — (Glycine max)
- GO:0015979 — Biological Process — photosynthesis
- GO:0009654 — Cellular Component — photosystem II oxygen evolving complex
- GO:0019898 — Cellular Component — extrinsic component of membrane
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0005509 — Molecular Function — calcium ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_06805, C.cajan_10174
- Cicer arietinum: XP_004495721.1
- Glycine max: Glyma.10G153200.1.p, Glyma.20G235100.1.p, Glyma.03G236600.1.p, Glyma.19G234500.1.p, Glyma.19G234500
- Juglans regia: WALNUT_00018446-RA
- Lotus japonicus: Lj1g3v4921080.1
- Manihot esculenta: Manes.08G119600.1.p
- Populus trichocarpa: Potri.013G019200.1, Potri.005G027200.1
Sequences
CDS Sequence:
- >KHN16112.1|Glycine_soja|C2H2|KHN16112.1
ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGCAGTTAAACAACAGCAATCTGAGATGCTTGGTCAGTTCCACAGTCCACATTCTCACACTTCAACTACAACAACAAATAATAGCAATGGTTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATTGCTCTATCACCGACCACACTAATGGCCACAAACAGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGACCAGAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCGTGGAAGCTGAAGCAGAGAACAAGCACGGAAATTCGAAAGAGGGTTTACGTGTGTCCAGAACCTTCGTGCGTCCACCACAACCCAGCAAGAGCACTCGGAGATCTCACTGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCACTCAAAAATATGTGGTACAAGGGAATACAAGTGTGACTGTGGTACCATCTTTTCCAGAAGAGACAGCTTCATTACGCACAGAGCTTTCTGTGACGCACTAGCTGAGGAGAACAACAAAGCCAACGAAGGACAATTGCCAAAGATAGGTCCAAACTTGCAATGTCAACAAATCCCAAACCTCGTTTCATCATTACCAATCAACACCAACAGCATTGTTCCCAACCCTGCACAAATGGGTGGCACCACCTCGGAGTTCAACCATGCTGATCACAAGCACCCACTATCACTCCCACACGAGCTCATGCCAATGCCTGCACAAAAACCCTTCAACAACAACATGGCTGCAGGAACAGTGTTCACGAGAAGCCTGTCATCAACCTCTTCTCCCTCTCTTCAACTAAGCTCAAACATGTTCGATGAAAACGGGCTCCACCTTGCTGCAGGGTCGCCACACATGTCAGCCACTGCGTTGTTGCAAAAAGCTGCGCAAATGGGAGCAACACTGACCGAAAAAAGTACTTTTGCAACAAACATGGCACCACCATCGTTTGGTGTGCTGCAACAGCATCATCATCATCAACAACCAAATGGGCAACCCTTCACGAACCAGTACATGCACAGTGGCCACCACCACCAACAACAAGAGGTTAACATTTCTACTCAGTATAGTTTCGAATTCATATACCCAGCAAATTGGGTGGGAGATCAGACGCTGCTGTATCGAGCTGCTAAGAAAAGAGAGATGGAACGATCATTGGATCCTCCTCCGCTGAATGAACGGCGGCGTTCTAACATCAATGAACCGGTTGTTGCATTTGGTCCTCCCGGTTCCACTGGAGAACTCAATGTTAGTGTCATTGTTTCATCTGTTGCTCCAGAATTCTCGATTGAAGCATTTGGGGGGCCAGATGAGGTGGGTGAAGCAGTGGTTCGAAGCATAACAGGATCAGGGCAACGCCCTGACGTTAAGGGGACATTAATAAAATCAAGTTTGAGAGAGGATTCCGTTACAAATGTCAAATACTACGAACTGGAGTTCAGAGTTGGGAGTCCCTCGTTTAGGCGACACAACGTTTCCGTTTGCTGCGCTCGTGATGGCAGGCTTTTTACATTAAATGCTCAGGCACCTGAATCAGAGTGGCCAGGATTGAAGTCAGAATTCTATAGGATTGCTAATTCATTTAGCCTCACAATTTAA
Protein Sequence:
- >KHN16112.1|Glycine_soja|C2H2|KHN16112.1
MSNITSCDSGSFSTENTREDAAVKQQQSEMLGQFHSPHSHTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNSIVPNPAQMGGTTSEFNHADHKHPLSLPHELMPMPAQKPFNNNMAAGTVFTRSLSSTSSPSLQLSSNMFDENGLHLAAGSPHMSATALLQKAAQMGATLTEKSTFATNMAPPSFGVLQQHHHHQQPNGQPFTNQYMHSGHHHQQQEVNISTQYSFEFIYPANWVGDQTLLYRAAKKREMERSLDPPPLNERRRSNINEPVVAFGPPGSTGELNVSVIVSSVAPEFSIEAFGGPDEVGEAVVRSITGSGQRPDVKGTLIKSSLREDSVTNVKYYELEFRVGSPSFRRHNVSVCCARDGRLFTLNAQAPESEWPGLKSEFYRIANSFSLTI