Information report for KHN05796.1
Gene Details
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Functional Annotation
- Refseq: XP_028229373.1 — lysine-specific demethylase REF6-like
- TrEMBL: A0A0B2P9C9 — A0A0B2P9C9_GLYSO; Lysine-specific demethylase REF6
- STRING: GLYMA04G36620.1 — (Glycine max)
- GO:0006281 — Biological Process — DNA repair
- GO:0032259 — Biological Process — methylation
- GO:0090305 — Biological Process — nucleic acid phosphodiester bond hydrolysis
- GO:0009507 — Cellular Component — chloroplast
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0003906 — Molecular Function — DNA-(apurinic or apyrimidinic site) lyase activity
- GO:0008168 — Molecular Function — methyltransferase activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_31616
- Cicer arietinum: XP_012571748.1, XP_004501832.1
- Glycine max: Glyma.04G191900.1.p, Glyma.04G191900, Glyma.06G173800.1.p, Glyma.06G173800, Glyma.04G192000.4.p, Glyma.04G192000.3.p, Glyma.04G192000.1.p, Glyma.04G192000, Glyma.06G174000.2.p, Glyma.06G174000.1.p, Glyma.06G174000, Glyma.04G192000.2.p
- Lotus japonicus: Lj0g3v0351959.1
- Medicago truncatula: Medtr3g075210.1, Medtr3g075210
Sequences
CDS Sequence:
- >KHN05796.1|Glycine_soja|C2H2|KHN05796.1
ATGAAACGGTTTTTCAAAGTGGTGGAGAAAGATTCAGATGGGTCTGTGAAGAAGCCAAGAGAGAATGATTCGGAGGCTGAAGAAAGTAATGAGAAGAAGGAGCCGTTGAAGTTTATGACTTGGAATGCCAACAGCTTTCTCCTTCGAGTCAAAAACAACTGGCCCGACTTCACCAACCTCATCACCACTTTTGATCCTGATCTCATTGCCATACAGGAAGTGCGGATGCCTGCTGCTGGTGCCAAGGGCGCGTCTAAAATTCAGGGAGAAATAAAAGACGATACAAGCGCGGCCAGGGAAGAAAAGAAGATTTTGACACGTGCACTTTCTGCTCCACCTTTTGGGAACTATCACGTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGCTTCAAAGCATGAACCAGATGGTCGAGTAATCCTAGTTGAATTTGAAACACTTCGTTTATTGAATACATATGTACCAAATAATGGATGGAAAGAGGAGGCAAACTCATTTCAAAGGAGAAGAAAATGGGACAAAAGGATACTGGAATTTGTTACACAAAGTTCAGACAAGCCTTTAATATGGTGTGGGGATCTGAATGTCAGCCATGAAGAGATCGATGTGAGTCATCCAGACTTTTTCAGTGTGGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAGGACTGTGGGCAGCCTGGGTTTACCTTGTCTGAAAGAAAACGGTTTGGTACCATTTTAAGAGAGGGGAAGCTGGTGGATGCCTACAGATTTCTGCATGAAGATAAGGACATGGAGCGAGGTTTCTCATGGTCTGGAAACCCAGTGGGAAGGTATCGTGGAAAACGAATGAGAATAGACTACTTTTTAGTTTCAGAGAAGCTAAAAGAAAGGATTGCTGCATGTGAAATGCGTGGACATGGGATAGAGTTAGAAGTTACTTTTGCTACTCTTGGTGAGAAAACCACAGTGATGTCACCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTGGTGACGTTTCCCAGAGCCTATCACTCAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCAAACATTGCAACACCGGAGTGGTTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTATGTTCTAGTATTCCTGCGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAAAACAATGATCTGCTTCATATACTTGGGAAAGGATCAGATGTAGTACTTCTTCCTCATAGCTCAGTTGACATTTTTGTTTGCCCAAAATTACGTGTTGGATTCCAACAATCCATCAATGTAAGAAATTCTGAGGGAATGCATTCCTCTAAAGGTTTTGTTTCAGATGATGTGGTATTCAGCAGGAGTCAAGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAACTTTACTACATTGTTTGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATAAGGGCTTCAAGTTCTAATCCACTTCAAAGAGACAATGATAGAGAAACTGGTCAAGGAGATTCGTTATCAGATCAGAGACTGTTTTCATGTGTAACATGTGGAATACTATGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGCTCTGGAGTATCTAGCAATAAATTTACTATTGCCCTTGAAGAAGCAACTATTGCTGAGCCAAACATGTATACAGGCAGGTTTTATAAGTTCTATATCCAGTCTTTCATACTTTGGGTTACATTTGAAAATACAAGGACAGTGCCTAATTCCACCTCTAATTGTTCCCAACAAGCTCATAATGCTGACAGGTCATTGTCTAACAAGTCTATGGTTGCCTTTGATAATAAAAATACTTCGATGGTGCTACAAGCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAACAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTTTGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATCTGGGGATTGATTACATGTGGAAGAAAATTGCATACAGGCACGCTTCCACGGAGGATGAGGAGAGGATCCAGTCGGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATTCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAACCAAAGGTATACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGACTCCGAAGATGTTGAGGATGAGAAACTCTTACTTGGGTGGATATTACCTGATGAGAAATTTGAGAGATCAGAAATTACCCTCAAAAGTGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCTGAGAATGGACGACCCAAGAAAGGAAGTTATGCTAAGAAAAATGTAGTTGCAGATAATTCCACTGAAGGTAAACACAACTCACAGCCAAGGAGGATTCTTAGAAATAAGAAAGCTAGGTGTGTTGAAAGAGACCATGCTGCTTTGAAAGGGGATTATTGTCCCCCATATCATCGGAAATCTATAAGCAAGCAAGCAAACTGCTCTGAAAGTGATGCAGTTTCTGATGATTCTCTTGATGATGATGATCACATGCATCATAGGAGGAATGCTATTGTTGAAAAAGACAAATTTATTGACAATGATGTTTCAAACGATACAGTGGACTGTGATTCTGACTGGCAGCAGAGGGAAGAACTTAGCAGCAAGAAAGTTGAAGATACAGAGAGAGTTGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAATTGCTTAGGAAGAATTCCAGAGCCAAGCATGCCAAAAACATAAGTCAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTGCAAAAGCGGCAAAGGAGAATTCCTAAAAGCAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGATGACCAACTAGAGCATAAAAAGAAGAAGCAGCAACGGAAGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGTAGATATCAGAGAAAGAATTCTAGAGGAAGACATGCCAAATGTGTAGCAGGGGAAGATGGCATGCCTGATGACCAATTGGAGGATCGTTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAGAGGTTAAAAATGAAATATCTGATGACCACTTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAACAAACACACTGATAAAGAAGTCATGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCCAAAAGGAAGCAAGCTAAATGCATGGAAGAAGATGATATGAATTCAGATGATGAAATGGAAGATAATCAGCCGCTGAGGAGAACACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCCTTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGGGATCTCGGATGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTTCTCATTTGCGGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAGGGAAAATTGAAAGACAAGCAAACAAAAAGGATGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCGGTTGGCGATGCCAGAATGCAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCATAAGAGAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTTTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAGATTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG
Protein Sequence:
- >KHN05796.1|Glycine_soja|C2H2|KHN05796.1
MKRFFKVVEKDSDGSVKKPRENDSEAEESNEKKEPLKFMTWNANSFLLRVKNNWPDFTNLITTFDPDLIAIQEVRMPAAGAKGASKIQGEIKDDTSAAREEKKILTRALSAPPFGNYHVWWSLADSKYAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEANSFQRRRKWDKRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFSVAKLNGYIPPNKEDCGQPGFTLSERKRFGTILREGKLVDAYRFLHEDKDMERGFSWSGNPVGRYRGKRMRIDYFLVSEKLKERIAACEMRGHGIELEVTFATLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSSIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSDVVLLPHSSVDIFVCPKLRVGFQQSINVRNSEGMHSSKGFVSDDVVFSRSQGIKQEKSFYSVKDNFTTLFERNRISSFDVNGNIRASSSNPLQRDNDRETGQGDSLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTIALEEATIAEPNMYTGRFYKFYIQSFILWVTFENTRTVPNSTSNCSQQAHNADRSLSNKSMVAFDNKNTSMVLQADEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKMVAEDLGIDYMWKKIAYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYSFGCSSPASSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLLLGWILPDEKFERSEITLKSETTSRKSGKKRKMTAENGRPKKGSYAKKNVVADNSTEGKHNSQPRRILRNKKARCVERDHAALKGDYCPPYHRKSISKQANCSESDAVSDDSLDDDDHMHHRRNAIVEKDKFIDNDVSNDTVDCDSDWQQREELSSKKVEDTERVAISEDSLDVGSLQLLRKNSRAKHAKNISQEDIISDDQMESPLQKRQRRIPKSRQGKYLTGKDIISDDQLEHKKKKQQRKNPKSRQAKYLNEEDIASDDQLEGHYRRYQRKNSRGRHAKCVAGEDGMPDDQLEDRCQKQQTSFSRKRQNKGIDREVKNEISDDHLEDHFLKQHRRFPKSRQNKHTDKEVMDDLAENNSHLLHRTPKRKQAKCMEEDDMNSDDEMEDNQPLRRTLRSKQAKPKTLQQMKQANSFQAKKQASRPIKQGSRMLVKSKAPQQIKQPSHLRNKQSNNTQEFSLDMEEEEEGGPSTRLRKRATKAQESEGKLKDKQTKRMKVKNAAAAKVSVGDARMQDGEAEYQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ