Information report for Kalax.0620s0006.1.p
Gene Details
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Functional Annotation
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- STRING: XP_008233302.1 — (Prunus mume)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn204031, CEY00_Acc03787
- Citrus sinensis: orange1.1g000392m
- Medicago truncatula: Medtr1g094740.1, Medtr1g094740
- Populus trichocarpa: Potri.008G037800.1, POPTR_008G037800v3, Potri.010G224700.1, POPTR_010G224700v3
- Prunus mume: XP_008233302.1
- Prunus persica: Prupe.2G211400.1.p, PRUPE_2G211400
Sequences
CDS Sequence:
- >Kalax.0620s0006.1.p|Kalanchoe_marnieriana|C2H2|Kalax.0620s0006.1.p
ATGAGGGATGTGGAAGTACCGCATTGGCTAATTAAATTGCCTCTTGCGCCTGAATTTCGTCCCACGGATACTGAGTTCGCTGACCCAATTGCTTACATATCGAAGATTGAGAACGAAGCTCGTGCTTTTGGTATTTGTAAGATCATACCACCCTTGCCAAGACCTTCAAAAAAGTATGTGTTTTCTAACTTGAATAGGTCCCTTTTGAAGTCCCCTGAATTGGGTTCTGATGCCACTGCGGTTAAATCATGCTCCGGTGTGAATGAGGGTGAGGTTAGGGCTGTGTTTACTACTAGGCAACAGGAGTTAGGTCACACTGAAAAGAAGGATAAAGCTGCAATTCACATGGGGCAAGGAGCTGTAAATAAGCAAGTTTGGCAAAGCGGGGAGTTATATACACTGGATCAGTTTGAGTCAAAGGCCAAAGCTTTTTATAGGAGTACTCTAGGCATGGTTAAAGACATCTCGCCTTTAGCTATAGAGGCTTTGTTCTGGAAGGCTGATTCTGAGAACCACTTATATGTGGAATATGCAAATGATGTGCCTGGTTCTGGGTTTGGTGAACCTAGTGGGAATGGGTCGTTTCAGCATTTTCATAAAAGGAGGCGGAAGAGGGTTTTTCGGAGGACTACTGAATCGTCACGTAAGAAGTATGAAGTTTGTGGTGCTAATGAATCACATGCAGATATTCAAGAAAACAATCTCAGTTCCGAAACTTCAAATGTGATAGTTAAAGTCAATACACATGTAGACGCTCCTGTTATATCTGACAAAACTGCAAATGACATACCTGGTGTTACTTCTCCAATGGTCTATATTGGCATGCTATTCAGCTGGTTTGCTTGGCATGTTGAGGACCATGAACTTCACAGTTTAAATTTTCTGCATACTGGCTCTTCTAAAACCTGGTATTCTGTCCCTGGCGATTATGCTTTTGCTTTTGAGGAAGTTATTCGAACTCGAGCATATGGAGAAAATGTTGACCGTTTAGCGGCTCTCATGATGTTGGGCGAGAAGACAACCCTTTTGTCACCAGAAGTAGTTGTTGCATCAGGAATACCTTGTTGCAGGTTAGTACAGAATCCTGGTGAATTCGTTGTAACTTTTCCAAGGGCTTATCATGTCGGCTTCAGTCACGGATTTAATTGTGGGGAAGCTGCCAATTTCGGAACACCGCAGTGGCTTAAAGTGGCCAAGGAAGCTGCCGTGCGAAGAGCTGCCATGAATTTTCTCCCAATGCTCTCCCATCAACAACTTCTTTACCTTTTGGCCATGTCTTTTTTGACGAGAGTGCCAAGAGCCGTGCTAGTGGGAGCACGAAGCTCCCGGCTGAGAGATCGTATGAAGGAAGAAAGAGAATTGTCAGTGAAAAAAGCATTTATAGAAGACATATTAAATGAAGATAAGCTTTTATCTGTTCTTCGTGGGGCAAAATCGACATACCGTGCAGTTCTTTGGGATCCTGAATCTCTACCATCTTTGAGTAAAGAACCTTCACTATTGAGTAAAATGGAAAACACCGTGGCCAATGCTAGTGATTCAAGTAACTCTAGCGTATTTCAAAGCAATCACAACCTGCTAGATGAGATGCGCTTTTACACGGAGACTATGAAGGACGATTATGTAGATGATGATGGCTTTCTGAGTGATTTTCAAGTAGATTATGGGGCTGTGGCTTGTGTTGCTTGTGGAATTCTTGGTTTTCCGTTCATGACTGTGGTACAACCCTCTGAAGCAGCTTCCCTCCATCTTCGACCCTTACTTGAAAACAAGTCGGTGGCTCAAGACGGATCATGCCTGGATCTGGATGTTAGTATTGATCATTCTATTTCAGTTCTTAGCAAACCCGTAGTGTCTTCTAATATGAAGGTTAACAAAGAGCAGAATGCATCCCATAGATTTTTCAGACCACGGGTTTTCTGCCTGGAGCATGCAGTTCAGGTAATAGAGCTGCTTGAGTCCAAAGGTGGTGCTGAGGTGCTTGTCATTTGCCACTCAGATTTTCAAAAGATAAAGAGCCACGCTGTAGCCGTTGCTGGTGAACTTGGAAGCAAGTATAACTATGATATGGTTCCATTAGATTGTGCGTCTCTTGAAGATCTGAACTTAATTGATCTTGCTGTTGATGAAGATAGAGAGGAAAGCGATGAAGACTGGAGCTCAGTGCTAGGTATCAACTTACGATGCTGCATTAAAATGAGAAAGAATTCATCATCTAAACATGTTGATCTTGCACTCAAATTGTTTGGGTTGCCCTCAAATATCACTCTGGGTTCAAGTTTATCACGCCTCAAGTGGCAGCACACAAGGTCTCGGTCAAAAACTCCGATACTCCATGACAGCAAACAGGTATCAAAACTTGTCAGTAACGGGATCAAAAAAGAGAAGAAAATTATCCAATATAAGAGAAGGAAATCCAAGCCGAAATCGTTTGGTTCTGCGCCTGTCAGGAACACCTCACTTGACTGTGAAGAAAATTCCGCTTCTTTCTCAAGCGACACTGATATTGCTGGAATAAGCATGTCAGAACTTGATAATTCTGTTAATATAAATAAAAGCCCCGCGTCCATGACTGAACTTAATCAGGTTGAGGGTTCACTAGTTACACCTTGGCCATCATTGGAAGTTATGCACTCAGATATTGTGGATCAATTAGAGGAGAGCGGTTCAGTACGTTGTGTTTGTGTTTCCACCAGTGTTGACGTCGTTGGGGCTGATAATGGGGTCCATGATACTAGGTATAAGGGTGAGACATCCTTGAATTGTGCTGTGGAGCACTCTAGTTGCGCAGATTCTCCTGTCAGAATGGAAGGTATGTCTGCGTCTGAAAACAACGGGCAAATTAGAAGTACAGACACTACTAACATCAAGGACACCGTAGAACATGAAATTGCTATACACGTTGATGGTAAAAATGTGCTAACTAGTATGGAACCTGATCTAGTTGCCGGTGGTATTCCAAGTGCTGCAAACCCAATGCTGGGGAAAACACATATGGATAATTTTACAGAGTGGGAGGTGAAAGATGAAGTGTGTGCCGTAATTCCATATAATGAGAGAAGCAATGAAGGTTCACCCTCATTGCTCTCACAGTCGCTGACCCAAATGTCTGCTTTTGAAGGCTCTTCCACGCTGCTCCCTCTTGCTAGTTGCAGTACTGAGGAATATGTTCTAGTAAAAGACACTCGGAGTTCAAAGGTAGCTGACACTCCAGGCACTGAAGAAAATTTGTGCAGTACTTCGTTGGCTAAATTGAGGGATAATTCCATAAATGCAGAGCCTGCCTATCTTGTTTCTATCGAGACTAGTGTTGGGGATGATTCAAGCTATGAAGTGGTGCAAATACGAACTATGAAGGGTGTCGATGATAAAGAGGATCCAAATAATCACAGGTTAACTGACTTTAATCAGGTTAGTCTTATGTCCGCTGGTGATGAATCTGCTGCTGCCAAATACATGGGTGCTAGTAAAGACTTGTACAATGTTGACCCAGTTTGTTCACTGGCAAAAACTGGGGAAACAGAAAATAATAGGGTTAAGCCCAAACCATCAAATAGGAATGCCAGGAAAAGGAATAGAGAGCTAGAGCAGTTAAGAGAGAAAAAAAGTGAGGTTGCTGACTTCATCAGGAGTCCTTGTGAAGGTCTGCGACCACGAAGTAAGATAGCATCAAGCAGCCATTACATTGATGTAAGACATTCCTACACCGAAGAACCGGCCATTGCTAAGAAAAAGTTGAAGCAGATACCAGCTGATACATCTACGTCCACGCCTAACAAGACTGGGAAACAAGAGTTGAAGGGATGGCACAGGTGTGACCTCGAATGTTGCATTTTGTCTTTCAAAACTAAAGCAAAGCTGCTTCTGCACCAACAGAACCAATGCCACATCCAAGGCTGTGGCAAGAAATTCAGTTGCCACAGGTACCTGATTGTTCACCAACGCGTTCATGTCGATGACAGACCTCTCAAGTGCTCATGGAAAGGGTGCAACATGTCTTTCAAGTGGGCATGGGCGCGTACTGAACACTTACGAGTACACACAGGTGAGCGCCCCTACAAATGCAAAGCTGAGGGTTGTGGGGTATCTTTCAGGTTCATCTCTGATTTTAGCCGACATAGAAGAAAAACAGGACATGGTGGTGATACACATAGTCCATTGGGTTAA
Protein Sequence:
- >Kalax.0620s0006.1.p|Kalanchoe_marnieriana|C2H2|Kalax.0620s0006.1.p
MRDVEVPHWLIKLPLAPEFRPTDTEFADPIAYISKIENEARAFGICKIIPPLPRPSKKYVFSNLNRSLLKSPELGSDATAVKSCSGVNEGEVRAVFTTRQQELGHTEKKDKAAIHMGQGAVNKQVWQSGELYTLDQFESKAKAFYRSTLGMVKDISPLAIEALFWKADSENHLYVEYANDVPGSGFGEPSGNGSFQHFHKRRRKRVFRRTTESSRKKYEVCGANESHADIQENNLSSETSNVIVKVNTHVDAPVISDKTANDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGDYAFAFEEVIRTRAYGENVDRLAALMMLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKVAKEAAVRRAAMNFLPMLSHQQLLYLLAMSFLTRVPRAVLVGARSSRLRDRMKEERELSVKKAFIEDILNEDKLLSVLRGAKSTYRAVLWDPESLPSLSKEPSLLSKMENTVANASDSSNSSVFQSNHNLLDEMRFYTETMKDDYVDDDGFLSDFQVDYGAVACVACGILGFPFMTVVQPSEAASLHLRPLLENKSVAQDGSCLDLDVSIDHSISVLSKPVVSSNMKVNKEQNASHRFFRPRVFCLEHAVQVIELLESKGGAEVLVICHSDFQKIKSHAVAVAGELGSKYNYDMVPLDCASLEDLNLIDLAVDEDREESDEDWSSVLGINLRCCIKMRKNSSSKHVDLALKLFGLPSNITLGSSLSRLKWQHTRSRSKTPILHDSKQVSKLVSNGIKKEKKIIQYKRRKSKPKSFGSAPVRNTSLDCEENSASFSSDTDIAGISMSELDNSVNINKSPASMTELNQVEGSLVTPWPSLEVMHSDIVDQLEESGSVRCVCVSTSVDVVGADNGVHDTRYKGETSLNCAVEHSSCADSPVRMEGMSASENNGQIRSTDTTNIKDTVEHEIAIHVDGKNVLTSMEPDLVAGGIPSAANPMLGKTHMDNFTEWEVKDEVCAVIPYNERSNEGSPSLLSQSLTQMSAFEGSSTLLPLASCSTEEYVLVKDTRSSKVADTPGTEENLCSTSLAKLRDNSINAEPAYLVSIETSVGDDSSYEVVQIRTMKGVDDKEDPNNHRLTDFNQVSLMSAGDESAAAKYMGASKDLYNVDPVCSLAKTGETENNRVKPKPSNRNARKRNRELEQLREKKSEVADFIRSPCEGLRPRSKIASSSHYIDVRHSYTEEPAIAKKKLKQIPADTSTSTPNKTGKQELKGWHRCDLECCILSFKTKAKLLLHQQNQCHIQGCGKKFSCHRYLIVHQRVHVDDRPLKCSWKGCNMSFKWAWARTEHLRVHTGERPYKCKAEGCGVSFRFISDFSRHRRKTGHGGDTHSPLG*