Information report for Kalax.0202s0049.1.p
Gene Details
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Functional Annotation
- Refseq: XP_021293341.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_021293342.1 — protein indeterminate-domain 5, chloroplastic-like
- TrEMBL: A0A061EG08 — A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
- STRING: VIT_01s0010g02090.t01 — (Vitis vinifera)
- STRING: EOY01198 — (Theobroma cacao)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Manihot esculenta: Manes.17G092200.1.p, Manes.15G141400.2.p, Manes.15G141400.1.p
- Populus trichocarpa: Potri.010G099100.1, Potri.008G142500.2, Potri.008G142500.1
- Ricinus communis: 29780.m001361
- Ziziphus jujuba: XP_015894322.1
Sequences
CDS Sequence:
- >Kalax.0202s0049.1.p|Kalanchoe_marnieriana|C2H2|Kalax.0202s0049.1.p
ATGTCTTCTTTCTTTGGGGGTGCCCGAGAGGATGACCAAAGTCATCATCATCTTCAGATGCTACAACAACAACAGCTACAACCACAGCAGCAACAACAAAACTCTTCTTCACTGCCTGCTCCTCAAGGGAAGAAGAAGCGCAATCTCCCTGGAACACCCAATCCAGATGCAGAAGTGATAGCTCTATCACCCAAATCATTGATGGCTACAAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGGGAGCAAAACTTGCAGCTTCACAGGAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGCAACAAAGAGGTCAAGAAGAAGGTCTATCTTTGTCCTGAGCCAACTTGTGTTCACCATGACCCGTCTCGAGCTTTAGGTGACTTGACTGGAATCAAGAAACATTACTCTAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAATGCTCCAAGAAATATGCGGTTCAGTCGGATTGGAAAGCCCATTCAAAGACTTGTGGAACTAGAGAGTATAGATGTGATTGTGGCACCCTTTTCTCAAGGAGGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTGGCTCAGGAAAGTGCACGCCATCCGACTGGCTTAAGTAGCATCGGCAGTCATATATATGGAGCCTCTGCGAGCCGATCCAGTCTAGGCCTCGATTTTCAAGTCGGTACCCAAATGCAATCTAATAACATGTTACGCCTGGGAAATGCCATGGGACCAGCTAAGTTCGATCACCACAGCCTAACTATGCCTCCAAATAACTCTAATCCGTTCGGACAACATCAGCAGATGCCCTCTCCATCTTCTATCTTCATGAATGATCCCAACACAAACCAAGGTGGGTTTCAAGAGCAATCTCATCAACAAGGGTTGATGATTCCCAACAAGGCCTTGTTTCATGGAATGATGAACCTTTCCGATCATCATGACCAGTCTCCGAACTCAGCATCAGCTAGTAGTATGTTCAACCTAGGATTCTACCCTAATGGCACCCCAAACAGAAGTATGAACAATAATCCTTCCAATTCGTCAAACAACAACATGTCATCATCCTCTGGATTTTTGAGCTCTGATGACCAGTTCAACATTGGGATCAGTGCTAACAATGTCAGTGGTGGTGGTGGAAGTCAACCAACTTCAACCAATCTCTTCTCTAGTACTTTGGGCAACAATCTAAGCTCAGGCAATCTCAACTCCATCTATGGAAACCCTTCCTTGCAGCACGAGAACCTCACTCCACATATGTCAGCCACTGCATTACTCCAAAAGGCAGCTCAAATCGGCTCCACATCAAGTGCAAGCAATTCATCCACATTGCTTAGAGGCTTAGCAGTTAGCTCCAACCCGGCAGCCAAATCTGATAGTGCACAACAGTTGATATCTCCTGCAGGTAACATTTCAGGGAGTAATAATTCATCAAGGACTGCCTTTGCACCAAATGGTGGAACCCTAAAACCAGCCTTAATGGACAATGATACTCACTTCCAAGGCCTCATCAACTCACTCACCAACGGGAGCTCATCCATATTTGGTGACCAAAATAGCTATACTGGGTTTGGTGATGCTGATCAGAACAATAACAACATGGGACTTGATCGTAATCTTCACCAACAACAACTCAACAATAATGCAAGTTTTGGCAGTAGTGCTGAAGCGAATAAGCTGCAACAAAATCTAGTTCGAGGGTCAGACAAGTTAACCCTAGATTTCCTTGGTGTTGGTGGGATAGTGAGAAACAATATGAATGCAGCATCAGCAGCTGCTGCTAGTGGATTCTTGCATAGAGAGCAGCAGCAGCAGCAACTGCAACAAAATCAACAGGGAGTAGATGGTAGGTCATTGGAATCTGCACGGGCAAATCTACCATTCGGGAGTGCCAAGTTTCACTGA
Protein Sequence:
- >Kalax.0202s0049.1.p|Kalanchoe_marnieriana|C2H2|Kalax.0202s0049.1.p
MSSFFGGAREDDQSHHHLQMLQQQQLQPQQQQQNSSSLPAPQGKKKRNLPGTPNPDAEVIALSPKSLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVKKKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTGLSSIGSHIYGASASRSSLGLDFQVGTQMQSNNMLRLGNAMGPAKFDHHSLTMPPNNSNPFGQHQQMPSPSSIFMNDPNTNQGGFQEQSHQQGLMIPNKALFHGMMNLSDHHDQSPNSASASSMFNLGFYPNGTPNRSMNNNPSNSSNNNMSSSSGFLSSDDQFNIGISANNVSGGGGSQPTSTNLFSSTLGNNLSSGNLNSIYGNPSLQHENLTPHMSATALLQKAAQIGSTSSASNSSTLLRGLAVSSNPAAKSDSAQQLISPAGNISGSNNSSRTAFAPNGGTLKPALMDNDTHFQGLINSLTNGSSSIFGDQNSYTGFGDADQNNNNMGLDRNLHQQQLNNNASFGSSAEANKLQQNLVRGSDKLTLDFLGVGGIVRNNMNAASAAAASGFLHREQQQQQLQQNQQGVDGRSLESARANLPFGSAKFH*