Information report for GSMUA_Achr10P03980_001
Gene Details
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Functional Annotation
- Refseq: XP_020106930.1 — lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: M0RF75 — M0RF75_MUSAM; Uncharacterized protein
- STRING: GSMUA_Achr10P03980_001 — (Musa acuminata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0003712 — Molecular Function — transcription cofactor activity
- GO:0004402 — Molecular Function — histone acetyltransferase activity
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn274201
- Brachypodium distachyon: Bradi2g58130.3.p, BRADI_2g58130v3
- Capsicum annuum: CA03g25230, T459_08258
- Panicum virgatum: Pavir.9NG271400.1.p
- Petunia inflata: Peinf101Scf02778g00033.1
- Solanum lycopersicum: Solyc03g111590.2.1, Solyc03g111590.3
- Solanum tuberosum: PGSC0003DMP400026608, PGSC0003DMG400015167
- Vitis vinifera: VIT_17s0000g09980
Sequences
CDS Sequence:
- >GSMUA_Achr10P03980_001|Musa_acuminata|C2H2|GSMUA_Achr10P03980_001
ATGGCCTCGGCGGTGTCGTCGTCGGCGCAGGGCGTGGTGGCCTCGGAGCCGCCGCCCATGGAGGTGCCGCCGTGGCTAAAGTCGTTGCCATTGGCGCCGGAGTTCCACCCGACGCTGCAGGAGTTCCAGGACCCCATCGCCTACATCCTAAAGATCGAGAAGGAGGCGGCCGACTACGGCATCTGCAAGATTGTTCCCCCCCTCCCCTCCGCCCCCAAGAAGACCGCCCAACAGATCGGCTTCTGCCCCCGCCGACCCCGACCCGTCCAGAAGCCCGTCTGGCAGAGCGGCGAGCGCTACACCCTTCAGCAGTTCGAGGCGAAGGCCCGCCAGTTCGAGCGCTCCTACCTTCGCCGGACCGCCGGAGGTGGCGGGCGCAAGGCCGCCACTGCTCCTGCCCTTTCTCCACTCGAGATGGAGACCCTCTTCTGGCGGGCTTCCGCCGACAAGCCCTTCTCTGTCGAGTACGCCAACGACATGCCTGGATCGGGGTTTGCGCCGCTGGCCGCCGCCGCGGGCCGACGCTGTCGCGAGGAGGTGCCGGCCAATCTCGGGGAGTCCGCGTGGAACATGCGGGGCGTGTCGCGGGCCAAGGGCTCGTTGCTCCGGTTCATGAAGGAGGAGATCCCCGGGGTTACGTCCCCCATGGTGTACGTCGCTATGTTGTTCAGCTGGTTCGCGTGGCATGTCGAAGACCACGAGCTACACAGCTTGAATTACCTGCATATGGGAGCGGGGAAGACGTGGTACGGGGTTCCGAGGGATGCGGGACTTGCGTTCGAGGAGGTGGTCGGGGTGCACGGCTATGGCGGGGATGGGAATCCTCTCATGACTTTTGCAATCCTTGGTGAGAAAACCACTGTTATGTCTCCTGAAGTCTTTGTTGGAGCAGGAATCCCATGCTGCAGCAGGTTGGTTCAAAATGCTGGAGATTTTGTTGTCACTTTTCCTGGGTCTTATCATTTGGGATTCAGTCATGGATTTAATTGTGGGGAGGCAGCAAATATTGCTACTCCTGAATGGTTGAAATTTGCCAAAGGGGCTGCAGTGCGAAGGGCTTCAATAGACTGTCCTCCTCTGGTGTCTCATTTTCAGTTGCTATATGCCCTTGCATTGTCATTGTGCACAAGGATGCCCATGTGTGAAGGAAGTGAGCCACGAAGTTCTAGACTAAAAGATAAGATAAAAGGAGAAGGGGAAGAGATGGTCAAAAATGCATTTGTTCAGAGTGTGATTCAAAATAATTACCTACTCAGTGTGTTGCTTGATTCGGGAAATTCCTGTGTAGTTCTTCCTCAAAATGCACCTGAAAGTCCTTTATGTTCAACTTCACTTGTCAGATCTCAAGTCAAGGTCAAGCCAAGAAAATCACTTGGCATATGCAACTTTAATGGGTTGTTTTCATTTAAAGGAAATTTTACATCAACAGGAAATGATAAAACAGTTTCATTAGGCACAGACAACAAATTTGTTAATGCTGATCACTACTCTACCTCCTTTGCATGTGTGGCTGTCGTACAACCAAGAGAGACAACAGCCAAATACTTAATGTCTGCAGATTGTAGTTTTCTTGATGATCATGTTTCTGGTTCAGGAGAAGCTAGTGGCATCAGCAGAGATACAAATCAGAGGACCAACAACAACAGCCTGGTTGCTGACATTGTTTATTGTACTGCATATCCAGTTCAAGTTTCAGACCAGAGTGTTGAAATGATTTCTGATGTTACATGTCCAAGTGGTGCTTCTGCACTTGATCTTTTGGCTTCTATTTATGAGGATTCTTCAGATGTTGAGGATGAAGATCCAGAAAATGGGAAATTAGTCAGTGCATCTTATTTAGAAGATAATAGAACAGTGGCAAATTCTGGCACTACCACAAAATTTGTGGGGGAACCCAGAGGTGCGCAATGTAGGGAACTAGATGGTCAAAATGCTGAAGATCATTACAGTAACTTAAAGATGGGAAATTTAACTTCTGTTTTCAAAGATCTCCCTGTCAACCTTATGCAAGGATCCGACAAAGATTCTTCCCGACTGCATGTATTCTGTCTCGAGCATGCTGCAGAGATAGAAAAACAACTTCAACCGATAGGTGGGGTGCATATGATGGTTCTGTGTCATCCAGACTATCCTAAAATAGAGTCAGAAGCAAAGTTGTTGGCAAAAGAACAGGGAATTGGTTATATCTGGAAGAATGTCAAATTCAGGGAGGCCAATGAAGAAGACCAAGAAAGAATCAGAGCAGCCATAGAGGATGAACAAGTCATGCCTATGAATAGTGATTGGACAGTGAAATTGGGAATCAACCTGTGTTATACTGCCAACCTTAGCAAATCTCCCCTATACAGTAAGCAGATGCCATATAATCCAGTTATATACAAGGCTTTTGGTCGTGATTCCACAGGCAACTCCCCTATGAAGCCAAAGGCTACTAGGAGGTGTCCAGGCAGGCAGAAGAAGATAGTTGCCGCTGGTAGGTGGTGTGGTAAGGTTTGGATGTCGAACCAGGTTCACCCATATTTAGCCCATAAAAAGGAAACACAGGAGCAAGAACAGACAGAAGGGCTTTATTCATTTGATACTGATCAAAATCCTTTGATTGAGATAGATATTGGTCATTCCAGCGGATTGTCTTCCAAAAGGAACTCATCAGGTAGCAATCTGGCAGCAAATAATTCTGGGAAGAAGAGGAAGAGGCCTTCGAAGATGGCAAAGTCTAAGAAACCCCTATACAGCAGCACCATGGCGGACAGAAATTCAAAAACTGACTATGTATCTGCAATTCCTGCATCTCCACTTGGAAGGACTTTAAGAAGCAGTCATCTCAGGCACAATGACAGCAGTAGCCAGGGTAAATCGAGTTTGAAAAATGAATCAGGAGGACCTGGCACACATCTCAAGAAACGATCATCCAAGTCTGAAGAGCTAAAGAATAAGTTGGCCAGCAAGAAGCAATCTACAAAGAGAAAGGCTAAAAATACTCAAACTGCAAGTCTTGCAGTTAAGGGCAAGGAGGAAGAATATACATGTGATATTGAGGGGTGCTCTATGAGCTTCAGCACAAAGCAAGATTTGGCACTACACAAGCGTGACATTTGTCCTGTCAAAGGGTGTGGGAAGAAGTTCTTCTCACACAAGTACCTCGTGCAGCATCGGAAGGTACACATGGATGACCGACCATTGGTTTGTCCATGGAAGGGGTGCAAGATGACATTCAAGTGGCCATGGGCACGGACCGAACATATTAGGGTGCATACCGGTGATCGTCCATACGTCTGCTGGGAATCAGGGTGTGGTCAGACATTCCGGTTTGTATCAGATTTTAGCCGTCACAAGCGCAAAACAGGCCACTCGGCAAAAAAGGGCCGTAGACGATCAGGCTTGGATCGGTGGGTTGTTGAAGCACAAAACATCCGTCGTTGGCTCGGAAACATGACCGAAGAAGAGAAGAAACGCGGCGAGGCGGAGATCCAGCGGTGGCTTGAGGTCGGGAGTGTCGAGATCCCGCCGGCCGATGTCCGGATCGTGACGTCCGGCGGGCGGCGAATACCTGTTCACTCCACCGTTCTGGCTTCTGCGTCGCCTGTGCTGGAGAGCATACTGGGTGGACCGCATAAGGGCAGGAGTCGAGGAAGGGAGATCCCCATTCTTGGCGTCCCATGCGACGCTGTCCATGCCTTCGTTCACTCACTCTACTTTGCCAGGTGCGTGTCGGCCACAGAGGAGGAGATGATCGGGGAGCACGGAATGCACCTGTTGGCGCTGTCGCACGCGTACCGCGTCGGGTGGTTGAAGCGCGCTGCCGAGCGGGCGCTCTCGTTGCGGCTGACCGCCGAGGGCGTGGTGGACGTGCTGGTGCTGTCGCAGCGGTGCGACGCGCCGCGCCTCCACCTGCGGTGCATGCAGCTGCTGTCGAAGGACTTCGCCGCGGTGGAGCAGACCGAGGCCTGGCGGTTCCTCCAGGACCACGACCCCTGGCTCGAGCTCCACATCCTCCAGTTCCTCCACCACGCCCACCTGCGGCGGCGGCGGCAGGCGAGGAGGAAGGCGGAGCAGAGGCTGTACGCGGAGCTGCACGAGGCCATGGACTGCTTGCGCCACATCTGCGCCGACGGGTGCGGGGAGGTGGGGCCCTCAGGCCGGCTCCTTCCAGCCGACGCCCGCCCCCCCTGCCCCAACGCCGTCAGTTGCCGCGGCCTCCGGCAGCTCATCCGCCACTTCGCGGCGTGCGACCGGCAGAAGCGGCAGCAGCACGGGTGCCGACGCTGCAAGCGCCTGTGGCAGCTGCTCCGCCTCCACGCCTCCATCTGCGACGAGGTCGACGACGCCTCCTGCAAGGTTCCCCTCTGCATACAATTCAAGCAGAGGATGCAGGAGAAGGAAGGGGAATTGGAGGAGGACGAGGACGAGAGATGGAGGCTACTGGTGAAGAAGGTGGCCTCCGCTAGAGTTATGTCGCACTTGGCCAAGAGGCAGAGTCAAGTATTAGTTTAA
Protein Sequence:
- >GSMUA_Achr10P03980_001|Musa_acuminata|C2H2|GSMUA_Achr10P03980_001
MASAVSSSAQGVVASEPPPMEVPPWLKSLPLAPEFHPTLQEFQDPIAYILKIEKEAADYGICKIVPPLPSAPKKTAQQIGFCPRRPRPVQKPVWQSGERYTLQQFEAKARQFERSYLRRTAGGGGRKAATAPALSPLEMETLFWRASADKPFSVEYANDMPGSGFAPLAAAAGRRCREEVPANLGESAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHELHSLNYLHMGAGKTWYGVPRDAGLAFEEVVGVHGYGGDGNPLMTFAILGEKTTVMSPEVFVGAGIPCCSRLVQNAGDFVVTFPGSYHLGFSHGFNCGEAANIATPEWLKFAKGAAVRRASIDCPPLVSHFQLLYALALSLCTRMPMCEGSEPRSSRLKDKIKGEGEEMVKNAFVQSVIQNNYLLSVLLDSGNSCVVLPQNAPESPLCSTSLVRSQVKVKPRKSLGICNFNGLFSFKGNFTSTGNDKTVSLGTDNKFVNADHYSTSFACVAVVQPRETTAKYLMSADCSFLDDHVSGSGEASGISRDTNQRTNNNSLVADIVYCTAYPVQVSDQSVEMISDVTCPSGASALDLLASIYEDSSDVEDEDPENGKLVSASYLEDNRTVANSGTTTKFVGEPRGAQCRELDGQNAEDHYSNLKMGNLTSVFKDLPVNLMQGSDKDSSRLHVFCLEHAAEIEKQLQPIGGVHMMVLCHPDYPKIESEAKLLAKEQGIGYIWKNVKFREANEEDQERIRAAIEDEQVMPMNSDWTVKLGINLCYTANLSKSPLYSKQMPYNPVIYKAFGRDSTGNSPMKPKATRRCPGRQKKIVAAGRWCGKVWMSNQVHPYLAHKKETQEQEQTEGLYSFDTDQNPLIEIDIGHSSGLSSKRNSSGSNLAANNSGKKRKRPSKMAKSKKPLYSSTMADRNSKTDYVSAIPASPLGRTLRSSHLRHNDSSSQGKSSLKNESGGPGTHLKKRSSKSEELKNKLASKKQSTKRKAKNTQTASLAVKGKEEEYTCDIEGCSMSFSTKQDLALHKRDICPVKGCGKKFFSHKYLVQHRKVHMDDRPLVCPWKGCKMTFKWPWARTEHIRVHTGDRPYVCWESGCGQTFRFVSDFSRHKRKTGHSAKKGRRRSGLDRWVVEAQNIRRWLGNMTEEEKKRGEAEIQRWLEVGSVEIPPADVRIVTSGGRRIPVHSTVLASASPVLESILGGPHKGRSRGREIPILGVPCDAVHAFVHSLYFARCVSATEEEMIGEHGMHLLALSHAYRVGWLKRAAERALSLRLTAEGVVDVLVLSQRCDAPRLHLRCMQLLSKDFAAVEQTEAWRFLQDHDPWLELHILQFLHHAHLRRRRQARRKAEQRLYAELHEAMDCLRHICADGCGEVGPSGRLLPADARPPCPNAVSCRGLRQLIRHFAACDRQKRQQHGCRRCKRLWQLLRLHASICDEVDDASCKVPLCIQFKQRMQEKEGELEEDEDERWRLLVKKVASARVMSHLAKRQSQVLV