Information report for GSBRNA2T00151759001
Gene Details
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Functional Annotation
- Refseq: XP_013621084.1 — PREDICTED: pentatricopeptide repeat-containing protein At5g15280
- Refseq: XP_013663573.1 — pentatricopeptide repeat-containing protein At5g15280, mitochondrial
- Swissprot: Q9LXF4 — PP384_ARATH; Pentatricopeptide repeat-containing protein At5g15280, mitochondrial
- TrEMBL: A0A0D3AJ68 — A0A0D3AJ68_BRAOL; Uncharacterized protein
- STRING: Bo2g012510.1 — (Brassica oleracea)
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn112951
- Arabidopsis thaliana: AT3G22470
- Arachis hypogaea: arahy.Tifrunner.gnm1.ann1.8Z4KH7
- Brassica oleracea: XP_013621084.1, Bol041075
- Daucus carota: DCAR_016546, DCAR_015659
- Glycine max: GmPPR576
- Lotus japonicus: Lj1g0015996
- Oryza sativa: FLO10, Rf4;PPR782a, Rf1a;Rf5, YSA, TCD10, RF6
- Triticum aestivum: Rf1;RFL77, Rf1
Sequences
CDS Sequence:
- >GSBRNA2T00151759001|Brassica_napus|C2H2|GSBRNA2T00151759001
ATGCTTAATCTCCTCTCCTCCAGATACTCTACTCGGCTTAAGGCTTCTCTTCTCTCACGCCGTTACTCTTTCGCGTCGTCCTCTCCAAGAAAGCATGAATCTTCTTCCTCACTCTCCGGAGGTATACTCGATCGGTTCTCGTGGTCTCTTGGCGGGGCAGCGAAGGCTTCATCTTCTCCTCTAAAGGACTTGCTTTTGGATTTGTCCGATGCGGTTCCCGACATCACCCGCAGATTCAGAAGATTCCTCGCCTTAAAACCAAAACACGTCCTCGAATTGCTACTGGGTTTCGAATCCGAGCTTCAGAGAGGCGTAAAGATCCAACCTTTATGGAATATCTTCATATGGGCTAGTAAGCAGCACAAAGGGTTTAAGCATCACCCTCAGGCTTACGAGATCATGGCGTCGTTTCTTATCAGAGAAGGAATGGTTAAGGAAGTCGAGCTCTTGCTGGTGGAAATGGAGAAGGACGGTGAGACGTTGGATAACGAGGTGATCTTCTGTGATTTGATTCAGAAGTATGTGGATGGTTTTGATTCGAGAAAGGCGGTTATGCTGTTTGATTGGATGAGGGGTAAAGGTTTAGTGCCTTTGACTTCGTGTTACGAGACTCTGATTGATCATTTGGTTAGTGTTTGTAAAACGGAATCAGCTTATAGAGTTTGTTTGGATTGGGTTGAGGCAAAGGATGAATCATTTGATAGATTTGATAAAGTTATTGAGTTACTCTGCTTGGATCAGAGGGTTCAGGAAGCTAGAGTTCTAGCGAGAAAGCTTAGTAGCCCCACTAGCTCTATATATAGTAAGATTTGTTTAGGGTATAACGAGAAGCAGGACTTCGAGGATTTACTGAGTTTCATCGGTGAGGTTAAGTACCAACCTGATGTGTTCGTTGGGAACAGGATTGTGCATTCTCTCTGCATGAGGTTTGGCTCGGAGAGAGCTTACGTATACACGGAGGAGCTTCAACGCTTGGGGTTTAAACCCGATGAGGCCACGTACGGTATCTTGATCGGCTGGTGTTGTCACGAAGGAGACATCAAAAGAGCGTTTCTTTACTTATCCGAGATTGCGTCAAAGGGTTTAAAGCCTGGTGTGTATAGCTACAACGCTATCTTGAGCGGGCTTTTTAGAAAAGGACTGTGGGAGCATACCGGTTGTATTCTAGAGGAGATGAAGGAGAATGAGATGTTACTGGGGTTGTCGACGTGTAAGATAATGGTGGCTGGATACTGCAAAGCTAGACGGTTTGAAGAAGCTAAGAAGATTGTTAAGGAAGCATCTAAAGTTGAAGATCCGCTAACAGAAGTGGGGTTTGATCCTTTGGCCGTTAGGTTGAAGAGAGACAATGGTAATGGACTCTCAAAAGCAGAGTTCTTCGATGAGCTTGGGAACGGTCTGTACTTGGACACTGATTTGGATGCTTACGGGGAGAAGGTGAACATGGTGCTTGACAGATCCGTCTTACCTGAGTTTAATCTGCTTATCGTTGATGCTTGTAGTGATGGTGATTTACACAGAGCTTTGAGTCTTCTTGATGAGATGCCTCGGTGGGGTCAGAAGCTATCGCGTCGAGGCTTCACTGTTTTGATAAAGAGTCTGTGTGTGTCACGTTCACATGTTAGAGTGAGTGTTAGCCTAATGAGGAAATGGCCGAAGCTGGCTAATCAGTTAGACGGAGAGACTCTCAACTTTCTTGTACAAGAGTATTGCAAGAAGGGGTTTAGTCGCCAGAGCAAACTCATTTTCCATAGAATGTCTCATCAAACGCATCTTCATATCGATAACGCAACTTACACATCTCTGATAAGTTGTTTCTGTAAGAAAGAATCACTCAAGGATCTACTCAATGTGTTAGACGCTGCAAAAAAGGCTGACTGGTTACCTGATTTGGAAACTTGCGGAGCTTTATGGGAATGTCTCCTCCATAAAGGACTTGTGAAGGAAGCGGTTAAGCTCTTTGAGCGTGTATTCATATCTTATCCTCTATCAAAGTCAGAAGCATGTAGGGTGTTTGTGGAGAAGCTCACGGTTTTAAAGTTTTCACGTGTGGCTTACTCTGTTGTGGAGAGACTTGAAGGAGAAGGTTACGTTGTGGAAGAAGAGGTTTACAACCTTCTCATCAAGGGACTATGTAAGGACAGGAACGATTCAGCTGCGTTTGCTGTACTAGAGAAAATGCTAGAGAAGAAACACGTTCCTAGCTTGTTAGATTCATATGCTTTGATAGAAGGACTATGCTTAGCTGGGAAGATGTCTGACGCAGAAGATCAGTTAAGAACAAGATTATCAAACGGTGTTTGCTTAGATAACGATATCTACAATTTGATGTTTGGAGGTTACTGTAAAGGTAACAACTTGAGGAGAGTTGAGGAAGTACTAGGGATCATTGTGAGGAAGAACGTGATCGTTTCTGTGAAGAGTTACAGAGAATACGTTCGGAGAATGTGTTCAGAGCGTAAGTTTATTAGTCTGTTGCTAGGAAAAAGCAATCCTGACGGTGTAATCATCTACAATCTGCTGATTTTCTATCTGTTTAAAGCTAAGAATCATACGGAGGTTGAGAAAGTTTTGCTTGAAATGCAAGGAAGAGGATTGTTCCCTGATGAAACAACGTTTAACTTTCTTGTTTACGGATACTATTCGTGTGGAGATTATTCGAATTCTTTGAGATATCTCTCGGCTATGATCTCTGAAGGGATGAAACCGAATAAGCGTAGTTTAAGAGTGGTTATTAGCTCTCTGTGTGACAGTGGAGATGTGAAGAAAGCTATTGACTTGTGGGAGGTGATGGAATCAAAAGGATGGAGCTTTGGTTCTTCTGTTGTTCAAACCAAGATTGCTGAATTGCTTATTTCGAGAGGTGATGTGGCAAAAGCTGAAGAGTTTCTGACTTGTGCGACACGCAATGGTTGCATGATGGCTCCCTGCTACGATAACCTCATCAAGAAACTATCTGGTTTAGGGAGTCTCGGCGTTGCGGTTCACCTCTTGAACATAATGCTAAAGAACCGAGAGGTTCCGGATTCTTCAAGCTATGATTCAGTCATCAACGGGTTGTTGAGATGCAGCAGCAACATGTTGGATGAAGCTAGGGACTTTCATACGGAGATGTTGGAGCTAGGTCTGAGTCCAAGCGTAAGTACATGGAGTGTTCTTGTTCATAAGTACTGCGAAGCGTGTCAAGTGTTGGAATCAGAGAGACTTATCAAATCAATGGTTGAGTTGGGCGAAACGCCGAGTCCGGAGATGTTTAGGATTGTAATTGATCGGTTTAGAGTTGAGAATAATACGGTGAAGGCTTCGGAGATGGTTGAGATGATGCAGAAGTGTGGCTATGAAGTTGATTTTGAGACTCATTGGTCTTTGATTAGTAACATGAGCTCTAGTAAGGAGAAGAAGACAGCAGCTGGCCAAGGGTTCTTGTCTAGGCTTCTCTCTGGGAATGGGTTTGCTTGGAAGCGATAA
Protein Sequence:
- >GSBRNA2T00151759001|Brassica_napus|C2H2|GSBRNA2T00151759001
MLNLLSSRYSTRLKASLLSRRYSFASSSPRKHESSSSLSGGILDRFSWSLGGAAKASSSPLKDLLLDLSDAVPDITRRFRRFLALKPKHVLELLLGFESELQRGVKIQPLWNIFIWASKQHKGFKHHPQAYEIMASFLIREGMVKEVELLLVEMEKDGETLDNEVIFCDLIQKYVDGFDSRKAVMLFDWMRGKGLVPLTSCYETLIDHLVSVCKTESAYRVCLDWVEAKDESFDRFDKVIELLCLDQRVQEARVLARKLSSPTSSIYSKICLGYNEKQDFEDLLSFIGEVKYQPDVFVGNRIVHSLCMRFGSERAYVYTEELQRLGFKPDEATYGILIGWCCHEGDIKRAFLYLSEIASKGLKPGVYSYNAILSGLFRKGLWEHTGCILEEMKENEMLLGLSTCKIMVAGYCKARRFEEAKKIVKEASKVEDPLTEVGFDPLAVRLKRDNGNGLSKAEFFDELGNGLYLDTDLDAYGEKVNMVLDRSVLPEFNLLIVDACSDGDLHRALSLLDEMPRWGQKLSRRGFTVLIKSLCVSRSHVRVSVSLMRKWPKLANQLDGETLNFLVQEYCKKGFSRQSKLIFHRMSHQTHLHIDNATYTSLISCFCKKESLKDLLNVLDAAKKADWLPDLETCGALWECLLHKGLVKEAVKLFERVFISYPLSKSEACRVFVEKLTVLKFSRVAYSVVERLEGEGYVVEEEVYNLLIKGLCKDRNDSAAFAVLEKMLEKKHVPSLLDSYALIEGLCLAGKMSDAEDQLRTRLSNGVCLDNDIYNLMFGGYCKGNNLRRVEEVLGIIVRKNVIVSVKSYREYVRRMCSERKFISLLLGKSNPDGVIIYNLLIFYLFKAKNHTEVEKVLLEMQGRGLFPDETTFNFLVYGYYSCGDYSNSLRYLSAMISEGMKPNKRSLRVVISSLCDSGDVKKAIDLWEVMESKGWSFGSSVVQTKIAELLISRGDVAKAEEFLTCATRNGCMMAPCYDNLIKKLSGLGSLGVAVHLLNIMLKNREVPDSSSYDSVINGLLRCSSNMLDEARDFHTEMLELGLSPSVSTWSVLVHKYCEACQVLESERLIKSMVELGETPSPEMFRIVIDRFRVENNTVKASEMVEMMQKCGYEVDFETHWSLISNMSSSKEKKTAAGQGFLSRLLSGNGFAWKR*