Information report for GSBRNA2T00125332001
Gene Details
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Functional Annotation
- Refseq: XP_009149819.1 — PREDICTED: lysine-specific demethylase REF6 isoform X1
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A078F414 — A0A078F414_BRANA; BnaA06g16550D protein
- STRING: Bra018060.1-P — (Brassica rapa)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >GSBRNA2T00125332001|Brassica_napus|C2H2|GSBRNA2T00125332001
ATGGCGGTTTCAGAGCAGAGTCAAGACGTGTTCCCATGGCTGAAATCGCTGCCAGTGGCCCCAGAGTTCAGACCCACTCTGGCAGAGTTCCAAGATCCGATGGCTTACATTTGCAAGATCGAAGAGGAAGCTTCCAGATACGGCATCTGCAAAATTGTGCCTCCCGTTCCTCCTTCCTCTAAGAAAACCGCCATTAACAACCTCAACCGCTCTCTCGCCGCTCGAGCCAGGGCCAGGGCTCGCGACGGCGGAAAGCCCGATTACGACGGCGGTCCCACATTCACCACGCGTCAGCAGCAGATCGGGTTTTGCCCTAGGAGGCAGCGCCCCGTGCAGAGACCCGTGTGGCAGAGCGGTGAGCGTTACACTTTCGATGAGTTCGAGTTTAAAGCTAAGAACTTTGAGAAGAGTTATCTTAAGAAGTGCGGCAAGAAGGGTTCCGTCTCGCCGCTCGAAGTCGAGACCCTTTACTGGAGAGCCTCGGTGGATAAGCCCTTCTCCGTTGAGTACGCCAACGACATGCCCGGGTCCGCTTTTGTGCCTCTGAGTTTAGCAGCCGCGAGGAGGAGAGAATCTGGTGGTGATTGTGGGACTGTTGGTGAGACTGCTTGGAACATGAGGGCCATGGCTAGAGCTGAAGGGTCTTTGCTTAAGTTCATGAAAGAGGAGATCCCTGGGGTCACATCTCCCATGGTTTATATCGCTATGATGTTTAGTTGGTTTGCTTGGCATGTGGAGGACCATGACCTCCATAGTCTCAATTACTTGCATATGGGTGCTGGTAAGACTTGGTACGGTGTTCCAAAGGATGCTGCTATGGCCTTTGAGGAGGTGGTCAGGGTTCATGGTTATGGAGAAGAGCTTAATCCTCTTGTGACATTTTCTACTCTTGGTGAGAAGACAACTGTTATGTCTCCTGAAGTATTTGTTAGAGCTGGGATACCATGTTGCAGGTTAGTGCAAAATCCTGGAGATTTTGTCATCACCTTTCCAGGAGCATATCACTCAGGGTTTAGTCATGGATTCAATTTTGGGGAAGCATCTAACATTGCAACTCCACAATGGTTGAGGATGGCAAAAGATGCAGCCATCCGGCGAGCTTCCATAAATTACCCTCCAATGGTTTCTCATCTCCAGTTACTTTATGACTATGCATTGGCTCTAGGTTCAAGAGTGCCAGATAGCATCCACAACAAACCAAGGAGTTCTAGATTGAAAGATAAGAAAAAAAGCGAAGGAGAAAAACTGACTAATGAACTGTTTGTGCAAAACATTATCCACAACAACGAGTTGCTCCATTCTCTTGGAAAAGGATCTCCAATAGCTCTTCTTCCGCAGAGTTCCTCAGATGTATCGGTTTGCTCTGACGTGCGAATTGGATCTCATTTGGGTGCTAACCAGGGACAGACAACACTCCTTATAAAATCTGAAGACTTGAGTTCCGATAGTGTTATGGTCAGTCTCAGTAACGGTGACGAAACCCAAGGAACTTCGACAGATGTTGAAAGGAGGAAAAATAATGGAGCTGTGGGGCTTTCGGATCAGAGGCTTTTCTCTTGTGTTACATGTGGAGTCTTGAGCTTTGATTGTGTTGCTATTATTCAACCTAAAGAAGCAGCAGCTAGATATCTAATGTCTGCGGATTGTAGCTTCTTGAATGATTGGACAGTTGCTTCCGGATCTGGAAACCTTGGTCAGGATGTAGTGATGCCTCCTTCAGAAAACACAGGAAAGCAAGATGTTGGTGACTTATACAATGCTCCTGTTCAAACTCCGTATCATTCAACAACGAAGACCGTTGATCAAAGAACTTCATCAAGTTCCCTAACAAAAGAGAGTGGTGCTCTAGGGTTGTTAGCTTCAGCATATGGAGACTCTTCTGATTCTGAGGAAGAAGATCACAAAGGCTTAGATAATCCTGTTTCGGATGAAGTTGCTTGCGTACTTGAAGCATCATCTTTTGTTACAGATGGCAACGACGAGGCTGGAAATGGTCTATCTTCTGCTTTAAACAGCCAAGGACTTACATGTGAGAAAGGAAAAGAGGTTGACGTATCACATGCTAATCTAAGCAAAGGCGGGAATGCATCATCTGTAGAGATAACTTTACCATTTATTCCAAGATCTGATGACGACTTCTCTCGGTTACACGTGTTTTGTCTTGAGCATGCTGCGGAAGTGGAACAACGACTTCATCCTATTGGGGGGATTAACATAATGTTGTTATGCCATCCAGATTACCCCAGGATAGAGGCTGAAGGAAAGGTAGTTGCCAAAGAGCTTGGAGTCAACCACGAGTGGAGTTACACTGAGTTCAAGAATGTGACCCGAGAGGATGAGGAAACGATCCAGGCGGCGTTGGCAAACGTTGAAGCTAAGGCTGGGAACAGCGACTGGGCTGTAAAGTTGGGTATTAACCTTTCTCACAGTGCTATCCTCAGTCGCTCTCCTCTCTACAGTAAGCAGATGCCTTACAACTCCGTCATTTACAATGTGTTCGGTCGCACCTCTCCAGCAACGCCCCAAGTTTCTGGTATAAGATCTTCCAGACAGAGGAAATATGTTGCTGGAAAATGGTGTGGTAAGGTTTGGATGTCGCATCAGGTGCATCCTTTTCTGCTGGAGGAGGACTTAGAGGGGGAAGAAACTGAAAGAAGTCATCTGCGAGCTGCTCTGGATGAGGATGTCACTGTCCATGGTAACGACTCTAGAGATGCAACCACAATGTTCGGAAGAAAGTATTCTAGGAAGAGAAAGGCGAGAGGGAAGGTTGCGCCACGCAAGAAGCTTACCTCTTTTAAGAGGGAAGCGGGAGTTTCTGATGACACATCAGAGGATCATTCCTATAAGCAGCAATGGAGGGCTTACGGGGATGAGGAAGAGTCTTATCTTGAGACGGGGAATGAGGTTTCTGGTGATTCGTCGAATCAAATGTCTGATCAGCAACAGCTCAAGGGTGTTGAATCAGATGATGATGAGGTTTCAGAGCGTTCACTTGGACAAGAATATGCTGTAAGGAGGGAATATGCATCTTCAGAAAGCTCGATGGAGAATGGCTTTCAGGTATACAGAGAGAAGCAGCCAATGTATGATGATGATGATGATATGTACAGGCACCCTAGAGGGATTCCAAGGAGCAAACGGACTAAAGTTTTTAGAGATCTGGTTTCATATGATTCAGAAGATCAGCAAAGGGAAAGGGTATTCACAAGTGATGCACAGACTAGTCGAATGGATGACGAGTACGATTCAGAAGAGAATTCATTGGAGGAACAAGACTTTTGCAGTAGCGGGAAAAGGCAAACCAGGTCCATCGCTAAACGTAAAGTAAAAACCAAGATAGTTCAGAGTCTGGGAGACACAGGAGGTCGCACTTTGCTACAATCTGGATCCAGAAAGAAGATGAAAGAGCTAGATTCATACATGGAGGGACCTAGCACACGGCTTAGGGTGAGAACCCCGAAGCCCTCGAGAGGATCTTCAGCAACAAAGCCGAAGAAAACTGGTAAGAAGGGAAGAAATGTTTCCTTCTCAGAAGTTGTAAGTGAAGAAGAGGTGGAGGAAAATGAAGAAGAAAGTGAGGAAGCTAGCACACGGATAAGGGAATGCTTGCCGTACCAATGTGACATGGAGGGTTGCACAATGAGTTTCAGTTCAGAAAAACAGTTGTCTCTGCATAAAAGAAACATCTGCCCTGTTAAAGGCTGTGGCAAAAACTTCTTCTCACACAAGTATCTGGTTCAGCACCAGCGCGTTCACTCAGATGAGCGTCCACTGAAATGTCCATGGAAGGGGTGCAAGATGACGTTCAAGTGGGCTTGGTCTAGAACGGAACACATAAGGGTACACACTGGTGAGAGGCCTTATGTATGTGCTGAACCGGGTTGTAGTCAGACATTCAGGTTTGTCTCAGATTTTAGCAGGCACAAAAGGAAGACGGGTCATTCAGCTAAGAAGATCAAGAAAAAGTGA
Protein Sequence:
- >GSBRNA2T00125332001|Brassica_napus|C2H2|GSBRNA2T00125332001
MAVSEQSQDVFPWLKSLPVAPEFRPTLAEFQDPMAYICKIEEEASRYGICKIVPPVPPSSKKTAINNLNRSLAARARARARDGGKPDYDGGPTFTTRQQQIGFCPRRQRPVQRPVWQSGERYTFDEFEFKAKNFEKSYLKKCGKKGSVSPLEVETLYWRASVDKPFSVEYANDMPGSAFVPLSLAAARRRESGGDCGTVGETAWNMRAMARAEGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAAMAFEEVVRVHGYGEELNPLVTFSTLGEKTTVMSPEVFVRAGIPCCRLVQNPGDFVITFPGAYHSGFSHGFNFGEASNIATPQWLRMAKDAAIRRASINYPPMVSHLQLLYDYALALGSRVPDSIHNKPRSSRLKDKKKSEGEKLTNELFVQNIIHNNELLHSLGKGSPIALLPQSSSDVSVCSDVRIGSHLGANQGQTTLLIKSEDLSSDSVMVSLSNGDETQGTSTDVERRKNNGAVGLSDQRLFSCVTCGVLSFDCVAIIQPKEAAARYLMSADCSFLNDWTVASGSGNLGQDVVMPPSENTGKQDVGDLYNAPVQTPYHSTTKTVDQRTSSSSLTKESGALGLLASAYGDSSDSEEEDHKGLDNPVSDEVACVLEASSFVTDGNDEAGNGLSSALNSQGLTCEKGKEVDVSHANLSKGGNASSVEITLPFIPRSDDDFSRLHVFCLEHAAEVEQRLHPIGGINIMLLCHPDYPRIEAEGKVVAKELGVNHEWSYTEFKNVTREDEETIQAALANVEAKAGNSDWAVKLGINLSHSAILSRSPLYSKQMPYNSVIYNVFGRTSPATPQVSGIRSSRQRKYVAGKWCGKVWMSHQVHPFLLEEDLEGEETERSHLRAALDEDVTVHGNDSRDATTMFGRKYSRKRKARGKVAPRKKLTSFKREAGVSDDTSEDHSYKQQWRAYGDEEESYLETGNEVSGDSSNQMSDQQQLKGVESDDDEVSERSLGQEYAVRREYASSESSMENGFQVYREKQPMYDDDDDMYRHPRGIPRSKRTKVFRDLVSYDSEDQQRERVFTSDAQTSRMDDEYDSEENSLEEQDFCSSGKRQTRSIAKRKVKTKIVQSLGDTGGRTLLQSGSRKKMKELDSYMEGPSTRLRVRTPKPSRGSSATKPKKTGKKGRNVSFSEVVSEEEVEENEEESEEASTRIRECLPYQCDMEGCTMSFSSEKQLSLHKRNICPVKGCGKNFFSHKYLVQHQRVHSDERPLKCPWKGCKMTFKWAWSRTEHIRVHTGERPYVCAEPGCSQTFRFVSDFSRHKRKTGHSAKKIKKK*