Information report for Gh_D09G1104
Gene Details
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Functional Annotation
- Refseq: XP_016671636.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
- Refseq: XP_016671637.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
- Refseq: XP_016671638.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
- Refseq: XP_016671639.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
- Swissprot: Q9C8N5 — STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
- TrEMBL: A0A1U8I5Z6 — A0A1U8I5Z6_GOSHI; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
- STRING: Gorai.006G131700.1 — (Gossypium raimondii)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn248021
- Citrus sinensis: orange1.1g009831m
- Fragaria vesca: mrna27486.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_01862_BGI-A2_v1.0, Cotton_A_08799_BGI-A2_v1.0
- Juglans regia: WALNUT_00010075-RA
- Malus domestica: MDP0000453148, MDP0000551046
- Manihot esculenta: Manes.18G099800.1.p, Manes.02G190700.1.p
- Prunus mume: XP_008237278.1
- Prunus persica: Prupe.8G055100.2.p, Prupe.8G055100.1.p
- Ziziphus jujuba: XP_015886371.1
Sequences
CDS Sequence:
- >Gh_D09G1104|Gossypium_hirsutum|C2H2|Gh_D09G1104
ATGGATCTTAAAGAGAGGGTATGTGGTGAGCTACAAAAGGAAGTTCCCAAAGGCGCGTCTTTTACTAAGTTCAATACACAGCATCAGCAGAAGTGGGAAGATCCATCATCCACTTCAGATTACAGCACCAGGATCGAGCCTCCTTTCCAGGCATTCAACCAGACTTCTCAAACTCAATCTTTATTGTTGTGTAATAACCAAATCAAAGTCCCTATGCAAGATGGTTCCGTCAATGACTTGCTTCAAGCCAGTAAAATCCAAGATTGGGATCCAAGTGCTATGCTAAACAATCTCTCATTCCTTGGGCAGAAGATCCATCAGCTTCAGGATTTGGTGTATTTAATCATTGGGCGGAAGGGTCAAGTGTTGGGGCGACCAGACGAACTTCTTGTTCAGCAACAACAGCTAGTTACTGCGGATCTCACTTCAATTATAGTTCAGCTGATATCTACTGCTGGTAGTCTTCTCCCGTCTGTAAAGCAAACACTTTCTGCAGCCACTACGTCTCTGGGACAGTGTGGGGAGTTTGGTGGAGTTGTCTTCCCTTCTTCTGCACAAGGGCTGAATGATGGGGTTCAGCCACAAAATGCTGGTGGAAGCAAAGTCTCTGAGCCGCCAAATTCTGTTGATATTACTAGTAACAATGGAAATGAGCAAAGTAATCATATAATCGAGGAGCATGAATTGAAAGATGAGGAAGATGCCGAGGAAGGAGAAAACCTTTTGCCTGGCACGTCTGAGATACTGCAGTTAGAAAAGGAAGAAATCCTTGCGGCCCACACTCATTTCTGCACTATATGTGGAAAAGGATTCAAGAGAGATGCAAATTTACGAATGCATATGAGAGGTCATGGAGATGAGTACAAAACACCAGGGGCCCTTGCGAAACCCACTAAAGAATCCAGCTCTGAACCAACTATTATTAAGAGGTATTCCTGCCCTTATGCTGGTTGCAAGCGGAACAAGGATCACAAAAAGTTTCAGCCACTGAAGACCATTTTATGCGTCAAAAACCATTACAAGAGAACCCACTGTGACAAGAGCTACATTTGCAGCAGATGCAATACCAAGAAATTCTCAGTAATTGCTGATCTGAAAACTCATGAGAAGCATTGTGGTAAGGATAAGTGGCTTTGTTCTTGCGGCACCACGTTTTCAAGGAAAGATAAGCTGTTTGGGCATATCACTCTTTTCCAAGGTCACACTCCAGCCATTCCTTCTGATGAAATTAAAGCAGCACCCGCCGGAACATCTGATGGAGCCACTAATAAGGTTGGAAGTGTGAATTTCAACCTCTCTTATGTTTCTAGTGAAAGTGAGGTTCAAAGTAGTAGTATGGACATTAAAGGGGGGATTGATGATGCTGTTGGTTACTTCTCACCGTTGAGCTTTGATACATGTAATTTTGGTGGGTTTCATGAGTTCCCTCGACCACCATTTGATGACTCAGAGAGTTCATTTGCATTTCTACTTTCTAGGTCCTGTAATTACAGTCAGAAAAGTGGAGAGGAGTAA
Protein Sequence:
- >Gh_D09G1104|Gossypium_hirsutum|C2H2|Gh_D09G1104
MDLKERVCGELQKEVPKGASFTKFNTQHQQKWEDPSSTSDYSTRIEPPFQAFNQTSQTQSLLLCNNQIKVPMQDGSVNDLLQASKIQDWDPSAMLNNLSFLGQKIHQLQDLVYLIIGRKGQVLGRPDELLVQQQQLVTADLTSIIVQLISTAGSLLPSVKQTLSAATTSLGQCGEFGGVVFPSSAQGLNDGVQPQNAGGSKVSEPPNSVDITSNNGNEQSNHIIEEHELKDEEDAEEGENLLPGTSEILQLEKEEILAAHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPGALAKPTKESSSEPTIIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHITLFQGHTPAIPSDEIKAAPAGTSDGATNKVGSVNFNLSYVSSESEVQSSSMDIKGGIDDAVGYFSPLSFDTCNFGGFHEFPRPPFDDSESSFAFLLSRSCNYSQKSGEE