Information report for Gh_D05G0428
Gene Details
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Functional Annotation
- Refseq: XP_016689692.1 — PREDICTED: protein indeterminate-domain 2-like
- TrEMBL: A0A1U8JH94 — A0A1U8JH94_GOSHI; protein indeterminate-domain 2-like
- STRING: Gorai.009G044300.1 — (Gossypium raimondii)
- GO:0005777 — Cellular Component — peroxisome
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g008724m, orange1.1g008017m
- Gossypium arboreum: Cotton_A_14012_BGI-A2_v1.0
- Manihot esculenta: Manes.03G049100.2.p, Manes.03G049100.1.p
- Populus trichocarpa: Potri.006G227600.1, Potri.006G227600.2, Potri.018G052200.1
Sequences
CDS Sequence:
- >Gh_D05G0428|Gossypium_hirsutum|C2H2|Gh_D05G0428
ATGATGAAAGGTTTGGTGGTGGATGAGAGCATTTCGAATTTGACTTCAACATCTGGTGAAGTAAGTGCTTCGACAAATCAAGAACCATTATCAAAGAAGAAGAGAACTCTACCAGGCAACCCAGACCCAGAGGCTGAAGTCATAGCTTTGTCTCCCAAGACACTGCTTGCAACAAATAGATTTATATGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGACATAACTTGCCATGGAAACTAAAGCAAAGAACAAACAAGGAAGTGGTGAGGAAGAAGGTATATGTATGTCCAGAGACAACATGCGTGCACCATCACCCATCTAGGGCTCTTGGTGACCTCACGGGAATCAAGAAGCACTTTTGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGAGAAGTGTTCAAAGCGTTATGCTGTTCAATCTGACTGGAAATCTCATTCCAAAATTTGTGGCACCAGAGAGTATAGATGTGACTGTGGGAACCTTTTCTCCAGGAGGGACAGTTTCATCACTCACAGAGCGTTTTGCGATGCTTTAGCTGAGGAGACTGCTAGAGCAATTACAGCTGCAAACCAACCTGGTTCTTCTGTTTCACACATAAATATGACCAATCTAGAATCCCAACCCCTACTCCATGGCTATGCCCTCAATGCAACATCTTTGAATAGAGACCAAGATCATCGTTTCAATGCAAGAGTAGAAGCTGCTGGGCCTGATTCTGGTCCCCCCTCAATAAATCTTTCATCATCACCATTTCTTTTAGGCCACCCACTGCCACATGACGAAAACCCTAGCCAAAACCCTAGTTCTACTACACTTCTTCCATTCCAAGCTCCGCCAGCTTCTCCACACACGTCTGCAACCGCACTCCTACAAAAAGCAGCTCAAATGGGGGTGACTTTGAGCAAGCCCTTACAATCACCAGTAGTATCCATGCAAAGACCTTACTACTACCACCACCAGGCTCACATGTGTGGTTCCACAACTTTTGCCACGTCTAGAGCTTGGGGTTTGTCGGCACGTGAAGAGTTGGGAAGTGAGTTCACCCACAGTTTGTCATCTTTTGGGAATAAAGCTCGTGTCACCCCTGGTTTCTTGGAACAGGTGGCTAACGCACCAAAGAGTAATGCAGGTGCTGGAGCCGGTGCTGCAGCTCCTAGTTCTCTACTCCATGATATGATGACTTCTTTATCTGGTACAAGTGAGCTAGAAGGGTCTTCATCTTTTGAACAGTCTTTCAATGGGACATGGATCACCAAAAGAAACAGCAATAAATTTCAAGAAAATTATATCGATCATCATAATTTCTCAGAAACAAAAGAATCCCAATCATGCAGAAGTGATAATCATGAAGGTAAAGGAAGTGGTAGTAGTAGTAGTAATAACATAAGAGGGAACGATGGGTTGACAAGAGATTTCTTGGGTCTTAAAGCTTTCCCACATACAGATATCCCCAACTTAGTAGGGCTTAATCATCACGTAAACTCTTCTTCAGCATATGGACAACCGAACCAGCACAGTGAAACACCATGGCAAGTAGAAGAGCGGAGAATTGTAATCCGAAACGATCATGGGGAGAACCTTGTTGGAATTTTACGCGAAACTGGTTCTAAGGATCTTGTCATCATTTGCCACGGTTTTCAATCCAAAAAAGAACGAATACCCATGGTGACTCTTGCCACTACTTTGGGAAGAGAGGGAATCAGTGCTTTCCGCTTTGACTTTGCTGGGAACGGGTTATTTGTGCTGTTGGCTTCCAGGGAAAGTGAAGGTTCCTTTATGTATGGTAACTACCGCAGAGAAGCCGAAGATTTACGAGCTGTCATCCGACATTTCCGCAAGAACCAACATCTAATAACTGCAATTGTTGGCCACAGTAAAGGGGGGAATGTGGTGCTTCTCTATGCTTCAAAGTACAATGATGTACCCACCGTCATCAATATTTCTGGCCGGTTCCATTTGGAGAAAGGCATGGAAGGTCGATTGGGTAAAGATTTTTTACAAAGAATCAAGCAGAATGGGTTTATTGATGTTAAGAATAGAAAAGGACAGTTTGAATATCTTGTAACTCAAGAAAGTTTGATGGACCGATTAACCACCGACACTCGTGCAGCATGTCTTTCGATTGATCAAAATTGCAGGGTATTAACCATTCATGGATCCAGGGATAAAATTGTACCAGCCAAAGATGCCCTGGAATTTGCCAGGTTTATACGAAATCACAAGCTGCACATAATTGAAGGAGCTGATCATGAATATACTGCACACCAGGATGAGTTAGCTACAGTTGTGCTCGATTTTGTAAAGGCAGTTCGTGAAGACAGAAACACAGCTGAACTTCTGCAATCATGCGAAAGAGCAGTTAATTTCATCAAAGCTCGAATCTGA
Protein Sequence:
- >Gh_D05G0428|Gossypium_hirsutum|C2H2|Gh_D05G0428
MMKGLVVDESISNLTSTSGEVSASTNQEPLSKKKRTLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVVRKKVYVCPETTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKSHSKICGTREYRCDCGNLFSRRDSFITHRAFCDALAEETARAITAANQPGSSVSHINMTNLESQPLLHGYALNATSLNRDQDHRFNARVEAAGPDSGPPSINLSSSPFLLGHPLPHDENPSQNPSSTTLLPFQAPPASPHTSATALLQKAAQMGVTLSKPLQSPVVSMQRPYYYHHQAHMCGSTTFATSRAWGLSAREELGSEFTHSLSSFGNKARVTPGFLEQVANAPKSNAGAGAGAAAPSSLLHDMMTSLSGTSELEGSSSFEQSFNGTWITKRNSNKFQENYIDHHNFSETKESQSCRSDNHEGKGSGSSSSNNIRGNDGLTRDFLGLKAFPHTDIPNLVGLNHHVNSSSAYGQPNQHSETPWQVEERRIVIRNDHGENLVGILRETGSKDLVIICHGFQSKKERIPMVTLATTLGREGISAFRFDFAGNGLFVLLASRESEGSFMYGNYRREAEDLRAVIRHFRKNQHLITAIVGHSKGGNVVLLYASKYNDVPTVINISGRFHLEKGMEGRLGKDFLQRIKQNGFIDVKNRKGQFEYLVTQESLMDRLTTDTRAACLSIDQNCRVLTIHGSRDKIVPAKDALEFARFIRNHKLHIIEGADHEYTAHQDELATVVLDFVKAVREDRNTAELLQSCERAVNFIKARI