Information report for Gh_A05G2549
Gene Details
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Functional Annotation
- Refseq: XP_017606763.1 — PREDICTED: probable lysine-specific demethylase ELF6
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: A0A0B0MQH6 — A0A0B0MQH6_GOSAR; Putative lysine-specific demethylase ELF6-like protein
- STRING: Gorai.009G313100.1 — (Gossypium raimondii)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna23255.1-v1.0-hybrid
- Glycine max: Glyma.20G181000.1.p, Glyma.10G209600.1.p, Glyma.20G181000, Glyma.10G209600
- Gossypium arboreum: Cotton_A_31963_BGI-A2_v1.0
- Populus trichocarpa: Potri.008G037800.1, POPTR_008G037800v3
- Rosa chinensis: RchiOBHm_Chr1g0362971
Sequences
CDS Sequence:
- >Gh_A05G2549|Gossypium_hirsutum|C2H2|Gh_A05G2549
ATGGGAAATGTGGAAATACCAAAATGGCTTAAACGGTTGCCATTGGCACCTGAATTTCGGCCAACTGATACCGAGTTTGCTGACCCTATTGCATATATATCAAAGATTGAGAAAGAAGCTGGTGCTTATGGCATATGTAAGATTATCCCACCGTTGCCTAAACCATCAAAAAAGTATGTCTTTAACAACTTGAATAGGTCACTGTCCAAGTCTCCGGAATTAGGAAGTGATGTGAATATTGGTTCTGTTTCGAATTTTGGGGATAGTGGTGGTGATGAGCGGGAAAGAAGGGCGGTGTTTACGACTAGGCATCAGGAGTTGGGATGGAGTGGGAAGAGAATGAAAGGGGTGGTTAGTAGTCCACAATGTGGTGCTCAGAAACAAGTGTGGCAAAGTGGGGAGATATATACGTTGGAGCAGTTTGAGTCCAAGTCAAAGACTTTTGCAAAGAGTTTATTAGGTCTGCTTAAGGAGGTATCACCGTTGCATATTGAGGCGTTGTTTTGGAAGGTGGCTTCGGAGAAGTCTATATATGTGGAATATGCTAATGATGTCCCTGGATCAGGTTTCGGGGAACCAGAGGGTCAATTTCGGTATTTCCATAGGAGGAGGAGAAAGAGGATGTCATACTGGAGGGAAAACTCTGATTGCAGGAAAGATGAGATTGATGCTGTAAATTATTCACAAATGGTTGAGATTAACAATACTTCTGTTAAAAGTGATCCAGATACACGTGTAGAAACACCCAAGTCATCTACTACATTGTCAACCATTGCATCAGATGTAAATTCACACTCTAAAAGAAAGAGTGGAAATGCTAGTAATGATATGGAAGGTACTGCAGGTTGGAAGCTTTCAAATAGTCCTTGGAACCTTCAAGTGATTGCTCGCTCAGCTGGCTCACTTACACGATTTATGCCTGATGATATTCCTGGTGTTACTTCCCCCATGGTTTATATTGGCATGTTGTTTAGCTGGTTTGCATGGCATGTTGAAGACCATGAGCTTCATAGCATGAATTTTCTTCATACTGGTTCTTCAAAGACTTGGTATGCTGTTCCTGGAGATCATGCGTTTGCTTTTGAGGAAGTTATCCGCGCCGAGGCTTATGGTGGAAACATCGACCGCTTAGCTGCTCTGTCATTATTGGGTGAGAAGACAACTCTTCTATCACCTGAGTTGATTGTCGCATCTGGCATTCCTTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACTTTTCCGAGAGCCTACCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCAAACTTTGGAACTCCACAGTGGCTTCAAGTTGCTAAAGAAGCTGCTGTTCGTAGGGCAGCTATGAACTATCTTCCAATGCTTTCTCATCAGCAGCTGTTATACCTTTTGACAATGTCGTTCATGTCAAGGGTACCAAGATCCTTGCTACCTGGTGCTCGCAGTTCTCGTTTGAGAGACCGCTTGAAGGAAGAACGAGAGGTGTTAGTAAAGAAGGCTTTTGTAGAAGACTTGTTGACCGAAAATAAATTGTTATCTCTTCTTCTTAAGAAAGGATCAACTTATCGTGCAATAATGTGGGACCCTTTGTTACTTCCTTATACAAGCAGAGATTCTGAATTGCCCAGCAGAACTGCTACAGATTCTACAATAATGCAAGAAAATGTTTCTGATATTAATGGTGAAGATAAATCTGATCAAAAGAATCTTTTAGATGAGATGTGCTTCTACATGGAAAATCTGAACTATTTATATTCGAATGATGATGATTTGACTTGCGATTTTCAAGTTGATTCGGGGACATTGGTTTGTGTTGCTTGTGGAATTCTGGGTTATCCATTTATGTCTGTGGTACAACCATCCGAGGGAGCAGCAGTGGAATTTCTACCTGTGGATCATCTTTCTAGTCAAGGTTCAACAGTCTTGGTACCTAAGAATGCCCATTCTTGCCCTGTTGAGGGCTCAGTTTCAGACAATCTCAATCATGTTCTGGATCTATCTCTTCCTTTCAAGCATTCGGCATTACCATCAATAACCAAGTTTTCCGATGGATGGGACACCTCTAATAAATATCTGAGACCTCGGATTTTCTGCCTGGAGCATGCTGTTCAAGTTGAGGAGCTTTTGCGGTCCAAAGGTGGAGCAAAAATGCTGATAATTTGCCATTCAGATTATCAGAAGATAAAGGCAAATGCAATACCTGTTGCGGACGATATTGGTATCCCTTTTAATTACAATGATGTTCCACTAGATGCTGCATCAGAGGAGGATCTAAATTTGATCAATTTTGCAATTGATGATGAACATGATGAAATTCAGGAAGACTGGACCTCCAAACTTGGTGTTAACTTGCGATACTGTGTCAAAGTCCGAAAGAACTCTTCGTTTAAGCAAGTTCAGCATGCACTACCATTGAGTGGTCTTTTCACCGATAAATATAGCAGTTTGGAGTTATTTAACATCAAATGGAAGTCGAGAAAATCTCGTTCAAAAGGCAAGTTAAACCACCCATCACCTTCTAAACCATGTGAAAGCGTTGAAATGAAAGTAGATGAAATAATGGTGGAAAAACTTGATAGCGACATTTCTAAATATGGGCAGAAAATTATTCAGTATTCGAGAAGGAAAAAAAGAAAATCAGATTATTCAACTGGAGGTGGTGGGGGTGTTGAACTGTTGAAGAATGACTTGCCAAGAGAAGATTCGGCTGCTTCAAGTCAACTTCTTGATAAACATGGAGGAAATAAATCCAAGATCAATTCCAGAAGTGAGTCAATTCAGGCACAGCTTGAGGTCCCAACTACCTCAGTTGTACAAAGGGACCAGAACAAAATTGTGGAGGAATCGGGTCCAGATGATGAAGCTCAGAGTTTGATAGCCTGTGCTAGTTCTATAAAGAAATGTGAGAACAAGCTTATGGAAAGGAACAGTGAGAATGATGAGAGTTCTCCTGCTGAAAAGTGTTCTAAATTCTGTCTTGTTGCGGATGATGAAGTGTATTTGGAAAATACTGCAACTGCTACCAAGGTTTGCAACCCAGTTTCTGAACAACAGAGTGATGAACCAACTTCCGGGTATGGTTTGATAAATGGTAACTCAGCAAGTTCACACTCTGCTCAGCGATGTGCTGGAAGATACAATCAAGGATTGGAGGACATAACTGTTCCAAAATTTTCTATAAACGGAGGGGCTTTTTCAGGTATGACGTCTGAGAACGAAGTGCAGCAAGGAACTGAAGCTACCAGCAGAAATAACTCCGAGGTGATTATAAGATCTGAAGTTCTAAAGGAGCCCTTTGCTGCAGCAGATTCATGTGACGGTACAGTTTCCCAGAATAAAGCACAGAAGCAGGAAATCCGGATTAATGCAAGGAAGGAAGTACTATCTGGTTCTTTCACGTCAGCAGGCATTGATCATCAGTCTACTGATCTCTCTGTCGAAGAATATTCCACAATTTCCAAGAATCCTGGTGCCGAAGAGGACTGTCATACCGATGTGACCTTAGATGTTGAAGTGTTCCAAGAGATCCAAGCTACAAAAGGAACCGGTGGGGATGAAGTTATAACTTGTTCCAATTTGCCAATGCAAGAAAAGCAGCCTACTCCTGTTATGATGGAAGCTTGCTCCGAGATTCAGCAGGATAGCAGTTCTTCGAAGAAGCCATGTGTTGGTGCAACTGCAGATGCTGACAGCCATGAAAATGACCCGAATAGATATGAAAAGAATGAAGAATCTGCTTCTTGCTGTCGTACACCTATAAATCAGACAACTATCCCAATCCAAAAGTACTCAAGAGCTCATAGAGACACTTATGCTACTGTGAATGTAAATGATGGCACGGGTGTTTGTTCTTCTGTAGAGAATGGAGATCTCGAGTCTGCTATGGTAAATTGTAAATCAAATGCCATGGGACGAAAGAGGAAGAGAGAACTGGAGGAAACATGTCAAAAGGTTGGCAGTGATGGCTTTATTAGAAGTCCATGTGAAGGGTTGAGGCCAAGGGCTTGGAAAGATGCAACCAGCAGTTTTGATGCAGACAAAGCATCCTCAGAGGGGCTGCAGACAAAAGAGACGAGGAAACCTTCAACTCATGCCCATAGGAAGATAATAATCAAAAAAGGGTCTCATGGATGTGACCTGGAAGGCTGCCATATGAGTTTCAAGACAAAGGAAGAGTTGAGGTTGCACAAACGCAATCGGTGTCCGTACGAAGGCTGTGGAAAGAAGTTCCGTTCCCACAAATATGCAGTCCTTCATCAACGAGTCCACGATGATGATAGGCCCCTCAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCTAGGACTGAACATATACGGGTGCACACCGGAGAACGCCCGTATAAGTGCAAGGTTGAAGGCTGTAGCCTTTCTTTCAGGTTTGTGTCTGATTTTAGTCGGCATAGACGAAAAACCGGGCATTACATTGACTCTTGA
Protein Sequence:
- >Gh_A05G2549|Gossypium_hirsutum|C2H2|Gh_A05G2549
MGNVEIPKWLKRLPLAPEFRPTDTEFADPIAYISKIEKEAGAYGICKIIPPLPKPSKKYVFNNLNRSLSKSPELGSDVNIGSVSNFGDSGGDERERRAVFTTRHQELGWSGKRMKGVVSSPQCGAQKQVWQSGEIYTLEQFESKSKTFAKSLLGLLKEVSPLHIEALFWKVASEKSIYVEYANDVPGSGFGEPEGQFRYFHRRRRKRMSYWRENSDCRKDEIDAVNYSQMVEINNTSVKSDPDTRVETPKSSTTLSTIASDVNSHSKRKSGNASNDMEGTAGWKLSNSPWNLQVIARSAGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDHAFAFEEVIRAEAYGGNIDRLAALSLLGEKTTLLSPELIVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLQVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFMSRVPRSLLPGARSSRLRDRLKEEREVLVKKAFVEDLLTENKLLSLLLKKGSTYRAIMWDPLLLPYTSRDSELPSRTATDSTIMQENVSDINGEDKSDQKNLLDEMCFYMENLNYLYSNDDDLTCDFQVDSGTLVCVACGILGYPFMSVVQPSEGAAVEFLPVDHLSSQGSTVLVPKNAHSCPVEGSVSDNLNHVLDLSLPFKHSALPSITKFSDGWDTSNKYLRPRIFCLEHAVQVEELLRSKGGAKMLIICHSDYQKIKANAIPVADDIGIPFNYNDVPLDAASEEDLNLINFAIDDEHDEIQEDWTSKLGVNLRYCVKVRKNSSFKQVQHALPLSGLFTDKYSSLELFNIKWKSRKSRSKGKLNHPSPSKPCESVEMKVDEIMVEKLDSDISKYGQKIIQYSRRKKRKSDYSTGGGGGVELLKNDLPREDSAASSQLLDKHGGNKSKINSRSESIQAQLEVPTTSVVQRDQNKIVEESGPDDEAQSLIACASSIKKCENKLMERNSENDESSPAEKCSKFCLVADDEVYLENTATATKVCNPVSEQQSDEPTSGYGLINGNSASSHSAQRCAGRYNQGLEDITVPKFSINGGAFSGMTSENEVQQGTEATSRNNSEVIIRSEVLKEPFAAADSCDGTVSQNKAQKQEIRINARKEVLSGSFTSAGIDHQSTDLSVEEYSTISKNPGAEEDCHTDVTLDVEVFQEIQATKGTGGDEVITCSNLPMQEKQPTPVMMEACSEIQQDSSSSKKPCVGATADADSHENDPNRYEKNEESASCCRTPINQTTIPIQKYSRAHRDTYATVNVNDGTGVCSSVENGDLESAMVNCKSNAMGRKRKRELEETCQKVGSDGFIRSPCEGLRPRAWKDATSSFDADKASSEGLQTKETRKPSTHAHRKIIIKKGSHGCDLEGCHMSFKTKEELRLHKRNRCPYEGCGKKFRSHKYAVLHQRVHDDDRPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKVEGCSLSFRFVSDFSRHRRKTGHYIDS