Information report for evm_27.model.AmTr_v1.0_scaffold00087.12
Gene Details
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Functional Annotation
- Refseq: XP_011622058.1 — uncharacterized protein LOC18430704 isoform X2
- TrEMBL: W1P4I3 — W1P4I3_AMBTC; Uncharacterized protein
- STRING: ERN02564 — (Amborella trichopoda)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >evm_27.model.AmTr_v1.0_scaffold00087.12|Amborella_trichopoda|C2H2|evm_27.model.AmTr_v1.0_scaffold00087.12
ATGGTGATTGAGAAGGCAAGAAGAACGCTGGGAGAAATTCTTGAGGAATTTGGTTTGTTGAGGAAGTTTGAGGAAAGAAGTGGTGTTTTTAGTTTTCAGGTGGAGATAGACATGGAGGCTAACAAGCACAAGACTAGCTATCACCACCCACCTGGGCAAGATAAAAATGATATTTGGGTGTGCCACAAATGTGGGTGGACATACCCAAACCCACACCCAAGTGCAAAGCACAGAAGAAATCACAAGAAGCATTGTGGAAAAATTGAAGGTTTCAAATTGATCGACTCTGATGACAAATCACACACCAATCTCTCTGACAAAGAGGCTTCTGATGAAGATCATGAACCCCAAGAAGCCCCAAAACCTGCAGCAGCCGCAAGTTTATCGGATGATCTCAAGGATTTAAAAGATGCTGGTTCAGAAGGATTAAGCAATGAGAAAGATGTTAACAGTGAAGTCAAAAGAGAAGGAATAAACAAAACTGAAGAAGAGGAGTCCACTGATGCAGTTGCTGAATTTACACGTACCGTTACTAGTTTGGTGCCTGCAACATCTTCTGCTGTTGGGTCTGAACATGGTTCAGTAATGGAATCACTCGGCCATGATTCCGGTGTTGTTTCAGAATCGTCACCGTTGATAACGGATAAAATGGTAAATTCTGGTGGTCTATTTCCTCCAGATGAAACTATGCAACATTGTGAAGAATCTACTTCCAAAACAAATGGGACGGAAATAAAGAATGAGACTGTTGCTTCTGATAAGGGTGAAATAAGGGAATTGCTTTTAAGCTCTGAAGATGATCCTAAGGATCCTTTGGATTCAATTGGAGCATCAGAGCAAGTGGAAATGGACCATAATGCAAGTGGTATAGGTGCAATTCCAAGTATGAGTGGTCTTGCGTGTATCTTGGAATCAGATCATCGCCAAGTGAAGGTCTTAGGGGATAGCGAACCACGGACCTTGCATTTTGAGGAAAGCCATGTTGTGGAAGCTCACAGTATTCATGTTCCTTTGGGGCAAAATGAATCAATCCATAATAACCTATCACAAAAGCCTGATGCCTCAGAAAGCAAAACGGAACAGTTGGATTCCTTTGAAGATTCTTTCCCAGAGCAAAGGGACGAGTCACCTGTAGCCGAGGCAGCGGAAAACAGTCGTATTTCCCCCAATTGTCCATCAAAAATTTTGGATGTGGGAAGTGCACCTTTGACTGAAAGTACTGATATGGATGGGAATGTGATGGAAAGCATAGGTGTTGCAGCAACAATTGATTCCTACGTCGAAAGTGATTCAGTTAGAAATTTATCAGCAATGGAAATATTGGCAGAGAAACATGCATATGAGATAAATTCTAACAGTTGTGAAGTTTATGGGTCGTCTGAGGTAACGGATTCAAAGGATTCAATATCCAGTTCCCCAGAGGAAAAGAACTCCGATGCTCTTGATAAGCCATCTCTAGATTCTGATTCTGGCTCTGTGGTAGCCCAAGTAGATGAAAAGAAGTCAGAGGAACTGGAGGGCCTCTTAGTTTCTGGTGCTGAAACAATAACGAAGACTGGAGACCATCTTAGAGGTTCACCTGATGCAGAAATGGCTGAAGTGATTTCTTCTACCCATGAGAAGGGGTCACACCAGTCTTTGAGTCAAGGTAATAAATTCATGGAGAGCCTTGATCAAGGCCATGGTGGGGCCAAGGGGAAAGAAGCTGATGAAAGCAATGAAGGTTCTACTTCATCCAGTGGAGACCAAGGAGAAATTCTTCAAACAGACAAGGAGTCAACACTTGATCAGAGTGCTAAGATTTGTGAAAGCAATAGCATTCAAGCTAGAGACAAAGCTCTTTTAGATTCTGAAGTAGATGATGGGCTTGACACCCATTCAAAAGTCACTAGTGCAGAATCTATTCTGAGTGCAATATCTCCTCTTGGAGAGAAGGACAATGTCTCTCGAAATGCTGTAGCAGTTGATGGGCTTGAATCCTCTACCAGTGTTTCAGATGAGGTGAATGTGAGTACGGGAAGGAATCCCGAGGTCGCAGTTGCTGATCCAAGTGCAGTGGATCTAATGGAGGTCCCTTGTCTGGATAGTGGAGCATCATTTTCTTCTACAAAGGAACTTTCTGAAGAGGAAATTTCCAGGAAAACCTCACAGGAATCTCATTCAGAAGTAATTGCAGTGAATGATCCAGTCTTTTCTGTTACTTTGGCAGTTGAGGGAAAAGCTACTGAAAGTGATAGCGTTGGCTTAGCTGGGACTCATGCACAAATATCTCGCGAGGGACAGAAATCTTCAGCAGCAGCCATGGTTACAGATTCTAGTGGTCCAGTGGCAGATGAAACAGAGGTCACTGCCCCAAGTCTGTCTAAGGATGTAGATGATGCAGAGGTCACTGCCCCAAGTCTCTCTAAGGATGTAGATGATGCAGAGGTCACTGCCCCAAGTCTCTCTAAGGATTTAGATTCTGAAGTAGATGATGGGCTTGAAACCCATTCAAAAATTACTAGTGCAGAATCTATTCTGAGTGCAATATCTCCTCTGGGAGAGAAGTACAATGTCTCTGGAAATTCTGTAGCAGTTGATGGGCTTGAATCCTCCGCCAGTGTTTCAGATAAGGTGAATGTGAGTACGGAAAGGAATCCTGAGGACGCAGTTTCTGATTCAAGTGCAGTGGATCTAATGGTGGGCCCTCGTCTGGATAATGGAGAATCAATTTCTTCTACAAAGGAACTTTCTGAAATATCCAAGAAAGCCTCACAAGAATCTCATTCAGAAGTAATTGCAGTGAACAATCCAGTCTGCTCTGTTACTTTGGCGGTTGAGGGAAAAGCTACTGAAAGTGATAGAGTTGGCTTAGCTGGGACTCATGCACAAGTATCTCGCGAGGGACAGAATTCTTCAGCAGCGGCCATGGTTAAAGATTCTAGTGGTCCAGTGGCAGGTGAAGCAGAGGTCACTGCCCCAAGTCTCTCTAAGGATGTTTCTCTGGATTCAACAAGCCAAACTGACAGTCTGGAGGGTCAGTGGGGTTCAGTTTCTGAGCCATCAACACAAGATATCCCAATCGAAAAGGAAGCTGCAGCATCAAATGTCTCAGATGCCAAGGCTAATCTAAAGGTGGCCCAAGGAAATCCTAATACGACATATGTCTTTGATGCGCCTTCTTTTATGACGCTGGTTGAACCTGGAAGGGGAAATGATGACCCCACCACAACTGCTGAAATCCAACCCACGAAGCCCCAGGGTTCCCAGGACTCACAAGCTGGTTGGTTCCCTTCACTTACTCAAGTTGTCAAAGATTCAGAGGGAAGGAAGAAGAATGAAGAGATCATTGCAAAGGTAACTAATTGGAGCACGAGCAAATCCCACACCCCATTGAGAAGCCTCTTAAATGAAGCAAACATGGAGATCAAGAATAAAAGCCCACCCCCACAAGACCAACCCGACATGCACGTTGAGACTGCACCCTCTGAGATGGGTAAGAATCCCCCAGCCTCTGAGAATAAGGCTAACGAGGTGTGGAACTCCCCTGCAAGGATGCCAGTCGATAGCCTTAAGATTGAGAAGCGCAAGCCTAGAGGAAAACCATCTTGGGTTCCTTTTGTATGTTGTTCCTCTGTTAATTAG
Protein Sequence:
- >evm_27.model.AmTr_v1.0_scaffold00087.12|Amborella_trichopoda|C2H2|evm_27.model.AmTr_v1.0_scaffold00087.12
MVIEKARRTLGEILEEFGLLRKFEERSGVFSFQVEIDMEANKHKTSYHHPPGQDKNDIWVCHKCGWTYPNPHPSAKHRRNHKKHCGKIEGFKLIDSDDKSHTNLSDKEASDEDHEPQEAPKPAAAASLSDDLKDLKDAGSEGLSNEKDVNSEVKREGINKTEEEESTDAVAEFTRTVTSLVPATSSAVGSEHGSVMESLGHDSGVVSESSPLITDKMVNSGGLFPPDETMQHCEESTSKTNGTEIKNETVASDKGEIRELLLSSEDDPKDPLDSIGASEQVEMDHNASGIGAIPSMSGLACILESDHRQVKVLGDSEPRTLHFEESHVVEAHSIHVPLGQNESIHNNLSQKPDASESKTEQLDSFEDSFPEQRDESPVAEAAENSRISPNCPSKILDVGSAPLTESTDMDGNVMESIGVAATIDSYVESDSVRNLSAMEILAEKHAYEINSNSCEVYGSSEVTDSKDSISSSPEEKNSDALDKPSLDSDSGSVVAQVDEKKSEELEGLLVSGAETITKTGDHLRGSPDAEMAEVISSTHEKGSHQSLSQGNKFMESLDQGHGGAKGKEADESNEGSTSSSGDQGEILQTDKESTLDQSAKICESNSIQARDKALLDSEVDDGLDTHSKVTSAESILSAISPLGEKDNVSRNAVAVDGLESSTSVSDEVNVSTGRNPEVAVADPSAVDLMEVPCLDSGASFSSTKELSEEEISRKTSQESHSEVIAVNDPVFSVTLAVEGKATESDSVGLAGTHAQISREGQKSSAAAMVTDSSGPVADETEVTAPSLSKDVDDAEVTAPSLSKDVDDAEVTAPSLSKDLDSEVDDGLETHSKITSAESILSAISPLGEKYNVSGNSVAVDGLESSASVSDKVNVSTERNPEDAVSDSSAVDLMVGPRLDNGESISSTKELSEISKKASQESHSEVIAVNNPVCSVTLAVEGKATESDRVGLAGTHAQVSREGQNSSAAAMVKDSSGPVAGEAEVTAPSLSKDVSLDSTSQTDSLEGQWGSVSEPSTQDIPIEKEAAASNVSDAKANLKVAQGNPNTTYVFDAPSFMTLVEPGRGNDDPTTTAEIQPTKPQGSQDSQAGWFPSLTQVVKDSEGRKKNEEIIAKVTNWSTSKSHTPLRSLLNEANMEIKNKSPPPQDQPDMHVETAPSEMGKNPPASENKANEVWNSPARMPVDSLKIEKRKPRGKPSWVPFVCCSSVN*