Information report for evm_27.model.AmTr_v1.0_scaffold00009.56
Gene Details
|
|
Functional Annotation
- Refseq: XP_020525113.1 — lysine-specific demethylase SE14 isoform X1
- TrEMBL: W1NI36 — W1NI36_AMBTC; Uncharacterized protein
- STRING: ERM94869 — (Amborella trichopoda)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >evm_27.model.AmTr_v1.0_scaffold00009.56|Amborella_trichopoda|C2H2|evm_27.model.AmTr_v1.0_scaffold00009.56
ATGGAGGATTTAGAAATACCAGAGTGGTTGAAAGGGTTGCCTTTGGCTCCCGAATATCGCCCAACTGAAACAGAATTTGCAGACCCAATTGCATACATTTCACAAATCGAAAAAGATGCGAGCCAATTTGGCATCTGCAAAATCATACCCCCTTTTCCTAGGCCTGCAAAGAAATATGTCTTTGCAAATTTGAACAAATCTTTAGCAAAATTGAAAGAACATGAAGTCATGGATCAAAGGGAGAATTCTTGTCCTGTTTCAAGGAGTATGGGCCCTTTGTCTAGCACTCGTCGTGGTTTATCGCTAATGGGTCATGTAATAGAAGAAAATGAGAATGATGGCCTTGCTGTTTTTACTACTAGGCATCAAGAATTGGGTTGGAACCCTAGAAAGATTCGTGGGGCTGGTCAGTCCGGTGTTCATATGCAAGTTTGGCAAAGTGGGGAGTCTTATTCACTGGAGCAGTTTGAGTCTAAATCTAGAGTTTTTGCACGTAATCAGTTTGGGTCTTACAAGGAGACTTCTCCCCTTTTGATTGAGACGTTGTTTTGGAAGGCAGCATCAGAGAAGCCGATATACGTTGAGTATGCGAATGATATTCCAGGTTCTGGATTTGGGGAACCTGAGGGACTTTTCAAGTTTTCATACAGACGGCATAGGAGGAAGAAAATCAACCCAAAAGGCAATTATAGTGCTAATCCTAACAAACTGGGAAGAGAGAGAAACATGGGTTTGAGCACAAAGGATGGTAATTCTGGTAAGCAGCCTAACAAGGATGGAGCAGAGAGAAACTTTGGTTTGGGCACAAAAGGTGACACTTGTGTAGAGGAGCTTAATAAAAGAGGAGATGAGACAAACATAGTCCCTGATACAAAAGATGGTTACCATGTGAAGGAGGCTTCCCACGACGATATTAAAAATGGGTGTGACTTGATGCGAACTTTAGGAGACTCTGAGCTATCTTTTGATTCATCTACTGTGCCTTTACCTAGAGAGGGGCAAAGATCTAGAGAGAAGACTTCAAATTATGGGGGCGATATGGAAGGAACGGCTGGTTGGAGGCTTGCTAATAGTCCTTGGAACTTACAGATTATTGCACGATCTCCTGGCTCCCTGACCCGTTACATGGCTGATGACATACCTGGTGTTACATCTCCAATGATTTATATTGGTATGTTATTCAGCTGGTTTGCTTGGCATGTGGAGGATCATGAATTGCATAGTTTGAACTTCCTTCATACAGGCTCCCCAAAGACTTGGTATGCAGTCCCTGGAGATGCAGCGTCCTCTTTTGAGGAAGTCGTAAGGTTGAAAGGTTATGGTGGGCATCTTGATTCATTAGGATCATTCTCCGCTTTAGGTGAAAAGACAACGCTATTATCTCCTGAAATAATTGTTGCATCGGGAATCCGCTGTTGTAGGTTAGTGCAACATCCTGGTGAATTTGTTGTCACTTTTCCAAGAGCTTACCACGTAGGGTTCAGCCATGGCTTTAATTGTGGTGAAGCTGCTAACTTTGCAACTCCTCAGTGGCTTAAGGTAGCAAAAGAAGCAGCAGTGCGCCGGGCTGCATTGAGTTATCTCCCCATGCTCTCCCATCAACAACTATTATATATGTTGACGCTGTCTTTTGATTCAAGGATACCTGCTGCCTTTCCCGCGGTACCTAGACGTTCTCGATTGAGAGATAAGAAAAAAGAAGATAGAGAAATGATACTCAAAGAAGCATTTATAGGTGATATGAAAGAAGAAATGGAGATACTGAATATTTTGATTGGCAAGAAATCTGCACAGTATTTGGTGTCTTGGGATCCTGAGTTATTGCCTGCACCCTGTGACCCTTCACTACGCTCCTCTCCTGCAACAGGCAAAATGCATTTGAATCCCGACGAGAAATCTTTGAATTTCTGCAACAAAGATGCCCATAATTTATTGCATGATGGGCCAGATGAGCTCTCTTTAGCTGGTTTCCATGTTGATTCGGGGACATTGACATGTGTGGCCTGTGGGGTTCTAGGTTTTCCTTGTATGGCAGTTATACAACCCTCTGAACAAGCTAGGAAGAACCTTTATTCAGAATTTGATGAAGTTGATCATGAAGAATGTGGAATTTCTATATCATTGAAGTCACAGTGTCCAACACTGGTAGCTGATGATGCGAATCCAAATTCAGACGTTTTGGAAGCACCTGTTATTGGTCCTGAAGTACAAAAGGATCTCTCAGAGGAAGAGAAACAGATGTTTTATGAAAATTCACTTAATCCGACGGATGTCTCCATTTCATACTTGGATCTGGGAAGAGATTCATCTCCCAAATGTGAGGACCATGTTTCTGAGTCACAACCAGCTTATGTATTAGATAATATCGATTTATTGAGTGATGGCCCTAAAGAAGCTTGTTTCACATCATCCATTGTGGAGGCAGATACTAATTGCCACTCCTTAAAAGCAGCTCCTCCTTTGAAAGAGCCTGCGGAAATGGAAGAGAAAGGGATATTGGTGACTGAAAATTTTGAGGAAATGGATTCCAAAACCATGTCAGGTTCTGGTTTGGAGAAGTCTTGCAATAATGCAGAGGGACTGATGAGTGGGCCTCCAGGAAATGGAAGTAGTCAACTAACCAATCACTGGAACCTATCAGAAGACAATTTTAGGCCTAGAATCTTTTGCCTGGAGCATGCCTTTGAAGTTGACAAGATGTTGCAGCGCAAGGGAGGTGTAAACATGCTTCTCCTTTGTCACTCAGATTATCCGAAAATACAAGAAAGAGCTGTTTCTGTTGCTGAAGAAATTGGGGCCAATTTCAATTGCAAAGGCATCCCCTTGGTGGCCGCCACTCCCTCAGAGCTCGAACTGATTTACATATCGATCGATGACGAAGAACATGAGGAAAGCGGCAAAGATTGGACCTCAAAATTGGGGGTGAATTTGCAGCATTCTATCAACCTCTGCAAGTCGTCTTCAGCAAAAGAGGGACATCATGGGTTGGGCTTGAGTGTCTTGTTTCCTGAAAATATTTGGGGGAGAGGCTTTTATGCGTCGGGCCTCAAGTGGAAGTTTCAAAAATCTCGATCCCATAATAAGGCAAAGACTTATCAGAAAAGACCCTCTATTGCTGGACAATGGTCACAGCATAATTTAGAAGGAAATCTGGTACAAGGTGATTTAGCAGGACAGCAAGAGGAAAATTCTTCATTAAAAAAATGCAGGCGACCTCGGGGCCGACCTAGAAAGCATGCTGTGGATAAGCATCATGATGGTGGTAAAATTACATCACCAGCAGGAGAGCGTTTAGTTAACAAAAACACTGACATTCTACAAAGTTCCATGATTTCAGAACAACCCCGTTTTCAAAAAATAAATGCAGAACAAACAAATAAGGAATCTGAAGTTTCTGCCAACTGCATGGATGGGGAAAACCCAGAAAAGGCTGATTCTGCTCGTTCAGGGGGAAAACCAATTATAAAGAAAGGAAGCAAGAGGAGTCTGCTGATCGAGAAAAGAAAACCTGATTCATGTATAATGACTTCAGAAGAAGCCAACATGTTGACTGAGGTTCCGGCTTTGAACTTTTGTTTGGATAGAGATGACCCAGATAATATAAACTCTGCCCCTTTCGAAACAAAGCCGGTATCAAAGACGGGTAGGAAGAGGAGAAACAGAACTCAGGAAGGTGAAGTTGATTCATGTATCATGAGCTCTGAGGAAACCAACATAGTGGATGAGGCCTTTATGCCAAAACATGGCTTGGATAGAGAAAACTCAGAAAACGTCGTATTCACCCCGTCAGAGACAAAACCATTTGTTAAGAGGAGGAAAGAGGTGGCAAATGAAGTGAATGCTAATTCATGCATCATCAGTTCTAAAGAAACTAACATGGTGGCTGAGATTCCGGCCTCAAAACATCTATCAGAGAGAGAAAATCCAAGAAATGTCAACCCTATCCCTTCTGAGACGAAACCAGTTGCAAAGACGGGGAGGAAAAGGAAAGAGGTGACCAATGAAGGGAATACTGATTCATGTATCATGATTTCTGAGGAAACCAACATGGTGCCTAAGATGCCTACTTCAATACATTGCTCAGATAAAGGAAATCCAGAAAATATTGATTCTGTCCCTTCGGAGACAAAACCACATGCTGAGGGGAGCAAGAAGAGATTGATAACTCAGGAAGGAAATGCTGATTCATGTACGAATGGTTCGGAAGAAACTCACATGTCAGATGAGATTCTCACTTTAAAACGTAGCTCTGATAGAGAAAACCCAGAGAACATTGACCCTGCCCCTATTGAGGCAAAACCAATTGCATATAATAGGAGGAAGAGGAGAAAGACAGCTCCAGAAGGGAATGATGATTTGTGTAATAAGAAGCCAGAAGAAACCAACATGGAAACCGAGGTCTCCACTTCAAAACATGACCTAGATAAAGAAGCCCCAGAACATAGTGATTCTGCCTCTTTGGATACAAAACCTGTTGTAAAGAAGGGGACCAAGGGAAAGAGAGAGGTCTTTCAGAAAGGAACTCATAGTTCATACTCCCGCAGTGGGTTTTGTTTAAGCCCGTGTGAGAACTTGAGGCCAAGGTCTAACACGTTCTGTTTAAGCCCATGCGAGAACTTGAGGCCGAGGTCTAATGACTCTGTATCTCAATCCAAAGAAGAAATTAGTGGGGTGAGAAGAAAGTCCTCGAGAGAGAAGAAATGGGTGGGAATGGAGAGAGCTGGGAATAGAGAGGTTGAGGGGGTGAAACTAAAGGGAAATGGTTCTTATAAAGAGGTTGAGGGGGTGAAACTAAAGGGAAATGGTTCTTATAAAGAGGTTGAGGGGGTGAAACTAAAGGGAAATGGTTCTTATAAAGAGGTTGAGGGGGTGAAACTAAAGGGAAATGGTTCTTATAAAGAGGTTGAGGAGGAGGGATCATACCGCTGTGACATCGAAAGATGTACAATGTGCTTTGTAACCAAGGGTGAGCTTCTTATACACAAGAAGAATGGATGTACCATTAAAGGTTGTAGAAAGAGGTTCAATTCTCACAAATATTTGGTTCTTCATCAGAGAGTTCACATGGAAGAGAGGCCATTAAAGTGTACCTGGACGGGTTGCAAGATGACCTTCAAGTGGGCTTGGGCTCGGACTGAGCACCTCAGGGTTCACACAAGAGAGAGGCCTTACAAGTGTGGAGCCCCAGGTTGTGATAGAACTTTTAGATTTGTGTCAGATATCAGTAGACACAAGCGCAAAACTGGCCATTGTGTGAACTGA
Protein Sequence:
- >evm_27.model.AmTr_v1.0_scaffold00009.56|Amborella_trichopoda|C2H2|evm_27.model.AmTr_v1.0_scaffold00009.56
MEDLEIPEWLKGLPLAPEYRPTETEFADPIAYISQIEKDASQFGICKIIPPFPRPAKKYVFANLNKSLAKLKEHEVMDQRENSCPVSRSMGPLSSTRRGLSLMGHVIEENENDGLAVFTTRHQELGWNPRKIRGAGQSGVHMQVWQSGESYSLEQFESKSRVFARNQFGSYKETSPLLIETLFWKAASEKPIYVEYANDIPGSGFGEPEGLFKFSYRRHRRKKINPKGNYSANPNKLGRERNMGLSTKDGNSGKQPNKDGAERNFGLGTKGDTCVEELNKRGDETNIVPDTKDGYHVKEASHDDIKNGCDLMRTLGDSELSFDSSTVPLPREGQRSREKTSNYGGDMEGTAGWRLANSPWNLQIIARSPGSLTRYMADDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSPKTWYAVPGDAASSFEEVVRLKGYGGHLDSLGSFSALGEKTTLLSPEIIVASGIRCCRLVQHPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKVAKEAAVRRAALSYLPMLSHQQLLYMLTLSFDSRIPAAFPAVPRRSRLRDKKKEDREMILKEAFIGDMKEEMEILNILIGKKSAQYLVSWDPELLPAPCDPSLRSSPATGKMHLNPDEKSLNFCNKDAHNLLHDGPDELSLAGFHVDSGTLTCVACGVLGFPCMAVIQPSEQARKNLYSEFDEVDHEECGISISLKSQCPTLVADDANPNSDVLEAPVIGPEVQKDLSEEEKQMFYENSLNPTDVSISYLDLGRDSSPKCEDHVSESQPAYVLDNIDLLSDGPKEACFTSSIVEADTNCHSLKAAPPLKEPAEMEEKGILVTENFEEMDSKTMSGSGLEKSCNNAEGLMSGPPGNGSSQLTNHWNLSEDNFRPRIFCLEHAFEVDKMLQRKGGVNMLLLCHSDYPKIQERAVSVAEEIGANFNCKGIPLVAATPSELELIYISIDDEEHEESGKDWTSKLGVNLQHSINLCKSSSAKEGHHGLGLSVLFPENIWGRGFYASGLKWKFQKSRSHNKAKTYQKRPSIAGQWSQHNLEGNLVQGDLAGQQEENSSLKKCRRPRGRPRKHAVDKHHDGGKITSPAGERLVNKNTDILQSSMISEQPRFQKINAEQTNKESEVSANCMDGENPEKADSARSGGKPIIKKGSKRSLLIEKRKPDSCIMTSEEANMLTEVPALNFCLDRDDPDNINSAPFETKPVSKTGRKRRNRTQEGEVDSCIMSSEETNIVDEAFMPKHGLDRENSENVVFTPSETKPFVKRRKEVANEVNANSCIISSKETNMVAEIPASKHLSERENPRNVNPIPSETKPVAKTGRKRKEVTNEGNTDSCIMISEETNMVPKMPTSIHCSDKGNPENIDSVPSETKPHAEGSKKRLITQEGNADSCTNGSEETHMSDEILTLKRSSDRENPENIDPAPIEAKPIAYNRRKRRKTAPEGNDDLCNKKPEETNMETEVSTSKHDLDKEAPEHSDSASLDTKPVVKKGTKGKREVFQKGTHSSYSRSGFCLSPCENLRPRSNTFCLSPCENLRPRSNDSVSQSKEEISGVRRKSSREKKWVGMERAGNREVEGVKLKGNGSYKEVEGVKLKGNGSYKEVEGVKLKGNGSYKEVEGVKLKGNGSYKEVEEEGSYRCDIERCTMCFVTKGELLIHKKNGCTIKGCRKRFNSHKYLVLHQRVHMEERPLKCTWTGCKMTFKWAWARTEHLRVHTRERPYKCGAPGCDRTFRFVSDISRHKRKTGHCVN*