Information report for DCAR_023101
Gene Details
|
|
Functional Annotation
- Refseq: XP_017254798.1 — PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
- Swissprot: Q9C8N5 — STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
- TrEMBL: A0A164UY59 — A0A164UY59_DAUCS; Uncharacterized protein
- STRING: VIT_18s0072g00840.t01 — (Vitis vinifera)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010044 — Biological Process — response to aluminum ion
- GO:0010447 — Biological Process — response to acidic pH
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn248021
- Citrullus lanatus: Cla016368
- Citrus sinensis: orange1.1g009831m
- Fragaria vesca: mrna27486.1-v1.0-hybrid
- Juglans regia: WALNUT_00010075-RA
- Malus domestica: MDP0000453148, MDP0000551046, MDP0000199559, MDP0000141403
- Manihot esculenta: Manes.18G099800.1.p
- Prunus mume: XP_008237278.1
- Prunus persica: Prupe.8G055100.2.p, Prupe.8G055100.1.p
- Sesamum indicum: XP_011097108.1
- Ziziphus jujuba: XP_015886371.1
Sequences
CDS Sequence:
- >DCAR_023101|Daucus_carota|C2H2|DCAR_023101
ATGGATCTTCAAAAGAGGCTGTGTGGAGTAGAAACATGGACAAAATTACCTTCGTCTACGCAACTTGAATTGCAGAAGAAGGTGCCTCCTGATCAACACTCTTTCATCAATTTTAGTTCTCAGGGAAATGTGCAGAAGTGGAATGATCCTTCAATTATTGATTACTCCACTAGGATTGGAGAACAGTTTCCTGAATTCGTTCAGCCTTCTCAAACACAGTGTACATATCCTTGCAACAATGATAATCAGATGAATATTCTTGGCCAACTAGATGGTCAGATGAATGGAATTCGTGATGCAATCCGAAATTGTGATTGGGATCCGAGAGTAATGCTGACTAATCTCTCAATCATGGAACAAAAGATCCACCAGCTCCAAGATTTGGTACATATAATTTTTGGTCGGAGAACTGAAGCTATGAATGGGTCCGAGGCACTGGCAGCTCAGCAACAGCAGTTAATTAATGCTGATCTCACCTCGATTATAGTTCAGTTGATCTCAACTGCTGGTAGTCTTCTGCCATCATCCAAGAATACCTTTTCCTCTGGCAATCCTTTTGGAAACGGACTTGGGCAGCCTGGTGGAATTGGATATCCTTCTGGACCTTCTGGAACTGTAAATAATCATGTGAACAAGGTAGAAGATCATTCCGACCAGATTGATCTGATTGTGAACAATGTCGAAGACCATGATCTGAAGGATGAAGAAGAAGTTGATGAAGGCGAACACCTACCCCCGGGTTCGTATGAAATTCTGCAACTAGAGAAAGAAGAAATTCTTGCACCTCACACACATTTCTGTCTCATATGTGGAAAGGGTTTCAAGAGGGATGCCAATTTGCGAATGCACATGAGAGGTCATGGGGATGAATACAAAACTCCAGCTGCACTTGCAAAGCCTCACAAGGAGATGTCTTCTGAGCCATCACTTGTTAAGAGGTATTCATGCCCTTACATTGGTTGTAAGCGAAACAAGGATCACAAAAAGTTCCAGCCTTTAAAAACGATCTTGTGCGTGAAAAATCATTACAAAAGAACCCACTGTGACAAAAGCTACACTTGCAGTCGATGCAATACAAAAAAGTTCTCAGTAATCGCAGATCTTAAAACACATGAAAAGCATTGTGGCAGAGACAAGTGGCTCTGCTCTTGTGGAACAACTTTCTCAAGGAAAGACAAGCTTTTTGGGCACATTACACTGTTCCAAGGCCATACTCCTGCCATTCCACTTGATGAAAATAAAGGAATGGTTGAGTTGTCCGATCATGGGGAAGCCAATGAAACTCCAAGTAAAGTTGCTCGAACAGATTTTGACTTCAGCCCTGCTGCCTTCCTAAATATTATGGACGCCAAGGGGACTGCTGACGAAGATACAAGAATTTTCTCGCCTTTGGACTTTGACATTAGTAGTCTCAGTGGTTTCAGTGACTTTCCCCGGCCTCCATTTGAAGACTCGGACAATTCTCTGTCGTTCCTGATTCCGAGTGCTTGTAATTACCCTAGGGGAACTGAAAGGAATCCAGGTTCTAATAACTTAAAATGA
Protein Sequence:
- >DCAR_023101|Daucus_carota|C2H2|DCAR_023101
MDLQKRLCGVETWTKLPSSTQLELQKKVPPDQHSFINFSSQGNVQKWNDPSIIDYSTRIGEQFPEFVQPSQTQCTYPCNNDNQMNILGQLDGQMNGIRDAIRNCDWDPRVMLTNLSIMEQKIHQLQDLVHIIFGRRTEAMNGSEALAAQQQQLINADLTSIIVQLISTAGSLLPSSKNTFSSGNPFGNGLGQPGGIGYPSGPSGTVNNHVNKVEDHSDQIDLIVNNVEDHDLKDEEEVDEGEHLPPGSYEILQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEMSSEPSLVKRYSCPYIGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHITLFQGHTPAIPLDENKGMVELSDHGEANETPSKVARTDFDFSPAAFLNIMDAKGTADEDTRIFSPLDFDISSLSGFSDFPRPPFEDSDNSLSFLIPSACNYPRGTERNPGSNNLK*