Information report for Cla002581
Gene Details
Functional Annotation
- Refseq: XP_008439230.1 — PREDICTED: lysine-specific demethylase REF6
- TrEMBL: E5GBX4 — E5GBX4_CUCME; Nucleic acid binding protein (Fragment)
- STRING: XP_008439230.1 — (Cucumis melo)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g001904m, orange1.1g001000m
- Cucumis melo: MELO3C002327P1, MELO3C002327
- Cucumis sativus: Cucsa.391680.1, CsGy1G009140
- Gossypium arboreum: Cotton_A_18629_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D09G2376, Gohir.D09G245700, Gh_D07G0545, Gohir.D07G058400
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3, Potri.012G092400.1, POPTR_012G092400v3
- Prunus avium: Pav_sc0000522.1_g100.1.mk
Sequences
CDS Sequence:
- >Cla002581|Citrullus_lanatus|C2H2|Cla002581
ATGGAGGCAGAAGCAAAACTGCTGGCACAAGAATTAAATATGAACCATCTGTGGACTGATACAATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAACTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAACCTATTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGAACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGCGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTACTGGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCTCTTCTTGGACAATGTCAGATGAGAAGATTGATAGGAAACCAGAAAATATCCAGAAAAACGAGACTGTTATGGTCAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGCGGAACAACTAAGAAAGCCAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGAAACAAGCGATCCAAATTTGTTGAGAGCAATGATGCTAGATCAGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATTAGCAAGGGAGTGACATATTGTGGGATAGATGATACTGGTTCAGATGATTCTCTTGGAGATCGTCATAATCTGCGCAGAGGGTTCTCTGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCACTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACAGAAGAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAGATGCAGTTTCAGAGGACTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCAGTCAAACGCACTGCAAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAATGTGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATACTGCTAATCAAAGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGGAGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACGTTAAAATTAGAGACCCCTCAGCCAAAAATACAGCCTGCCACAAATAGACGAGGTAAGCAAACTAAGAGGAATAGTAAATCGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACCCCAAAGCCTACAAAACTTTCAGAAGCAAAGCCAAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCCTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGACGAGGAATCAGAGTATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCATGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTTAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGTAGAGGTTAA
Protein Sequence:
- >Cla002581|Citrullus_lanatus|C2H2|Cla002581
MEAEAKLLAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEATPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFSSWTMSDEKIDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASVEDCIHQHHSILRNKRSKFVESNDARSDDSVEDDSCRKHGVPISKGVTYCGIDDTGSDDSLGDRHNLRRGFSGFKLPKWGEIEPALSDDSLEHYSSQHRGKNIKSKTEEYIERQDALSDECLESGSLKQYRRIPRSKQTKVLKKNAISHDIRDDSFLWHHQRPSRSKKAKSIESEDAVSEDSLENNSHQHRSMPQRKPVKRTAREDAFSDGPDEDDNSLLQHRNIRRNVQFKYSEREITSDDQLDDTANQSRRRVLRSKPVKTETISQMKQEILRPARRRASQTLKEEFAQSLKRGGRHTLKLETPQPKIQPATNRRGKQTKRNSKSTDLESEEEQPGGPSTRLRKRTPKPTKLSEAKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG