Information report for Ciclev10004533m
Gene Details
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Functional Annotation
- Refseq: XP_006420703.1 — protein indeterminate-domain 5, chloroplastic
- Swissprot: Q9ZUL3 — IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
- TrEMBL: V4RIS4 — V4RIS4_9ROSI; Uncharacterized protein
- STRING: XP_006420703.1 — (Citrus clementina)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g006491m, orange1.1g006487m, orange1.1g008103m
- Manihot esculenta: Manes.17G092100.1.p, Manes.15G141300.1.p
- Populus trichocarpa: Potri.008G142400.5, Potri.008G142400.4, Potri.008G142400.3, Potri.008G142400.2, Potri.008G142400.1, Potri.010G099200.6, Potri.010G099200.5, Potri.010G099200.4, Potri.010G099200.3, Potri.010G099200.2, Potri.010G099200.1
- Ricinus communis: 29780.m001362
- Ziziphus jujuba: XP_015894326.1
Sequences
CDS Sequence:
- >Ciclev10004533m|Citrus_clementina|C2H2|Ciclev10004533m
ATGAATATGTCAGCTTCTTCATCAGCTCCTTTCTTTGAAATTAGAGAAGATCAGAATCAGATGAAGCAACAACATTCTTCAACACCAACTTCATCTTCAGCTCCACCTCCAGTTCCACCACCTCAGAAGAAAAAAAGAAACCAGCCCGGAACTCCAAATCCGGATGCGGAGGTGATAGCACTATCACCAAAGACTCTAATGGCAACAAACAGGTTCATATGTGAAGTATGTAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAAGTGAAGAGGAAGGTCTATCTTTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCTAGAGCTCTTGGTGACCTTACTGGCATCAAAAAACACTACTCAAGAAAACATGGTGAGAAAAAATGGAAGTGTGAGAAGTGCTCCAAACGTTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAATATCGATGTGATTGTGGCACCCTTTTCTCCAGGCGCGACAGTTTTATCACTCACAGGGCTTTCTGTGATGCACTCGCTCAAGAAAGTGCAAGACACCAACCAAGTTTGAGTGCCATTGGCAGCCATTTATATGCAAGTACCAACAACATGGCCTTAGGCTTATCTCAAGTGGGTCCCCAACTTTCCTCAATCAAAGACCACCACCAACCCAATCAATCCGGTGACATTTTATGCCTCGGCGGCAGTGGTTCCCGGTCGACGCCATTTGATCATCTGCTTTCACCTTCAATGGGGTCTTCATCGTCGTCGTTCCGACCACCGCAGAGTTTGGCGTCAACCCCATTTTTCATGCAAGAATCAAACCAGAACTACCATGAAGAGCAACAACAGCATCAACAAGGGTTGTTGCCAAATAAGCCGCCGCCGTTCCATGGACTAATGCAATTTGCTGATCTTCAAAACAACCCAAACAACAGTAACCCAGTTACAAACTCAGCAGCAGCAGCTAATAATCTCTTCAACCTTAGCTTCCTTTCAAATAGTAGCTCAACCAACAGCTTAAGTAACAGCAACAGCAACAACAACAATAACAATGCCAGCAACTTAATGTTATCTGCAGCAGGTGGTCATCATCATCACTTCAACAACAATGAACAAAATGGGACTGCTAGTACTGGCACCGGTGGAGTTGATCATCATCAAGGAACGAACAATAATCTCTTCACGAACAACTTAATCAGCGATCATCAAATCAGCTCCGGCGCTGTCCCCTCACTCTTCAGTACCTCATCAGTGCATCAAAATGAGACCATGGTCCCCCACATGTCAGCCACAGCACTTCTTCAAAAGGCTGCTCAAATGGGCTCAACTTCAAGCAACAACAACACTGCTTCGTTGCTAAGGAGTTTCGGCGGAAGCTCGTCCTCAAGTGGCTCAAAACCTAATAACAACAACAACAACTTTGGTGGTGTTGGTAACGTATTTGGTGGGCCCGGATCATCAGAAAATGATAACAGCAGCAGCATCCATGACCTAATGAACCCATTTGCAGCCACCAATTCATCGATTTTCGGAACTGGGTCAAATGATCAAGTCAATGCATTTAGCGGGCAAGATCAAAACCACCACCGCCGCCACCACCATCATCACCCTAATTATGAAGCAAAGCTGCACCATAATATGAACGCAGGCATGGGTGGATCAGATAGAATGACCAGAGACTTTCTTGGCGTTGGACAAATTGTGAGAAGCGTAAGTGGTGGGTTTCAGCAAAGAGAAAAACAACAGCAGCAACATGGCGGCGTCATCGATGTAAGCTCATTGGATTCAGAGAGAAACATCACTGCACCAACAAGCCAATCATTTGGAGGAGGAGGAGGAGGAGGAGGAGGGAGCTTTCACTGA
Protein Sequence:
- >Ciclev10004533m|Citrus_clementina|C2H2|Ciclev10004533m
MNMSASSSAPFFEIREDQNQMKQQHSSTPTSSSAPPPVPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHQPSLSAIGSHLYASTNNMALGLSQVGPQLSSIKDHHQPNQSGDILCLGGSGSRSTPFDHLLSPSMGSSSSSFRPPQSLASTPFFMQESNQNYHEEQQQHQQGLLPNKPPPFHGLMQFADLQNNPNNSNPVTNSAAAANNLFNLSFLSNSSSTNSLSNSNSNNNNNNASNLMLSAAGGHHHHFNNNEQNGTASTGTGGVDHHQGTNNNLFTNNLISDHQISSGAVPSLFSTSSVHQNETMVPHMSATALLQKAAQMGSTSSNNNTASLLRSFGGSSSSSGSKPNNNNNNFGGVGNVFGGPGSSENDNSSSIHDLMNPFAATNSSIFGTGSNDQVNAFSGQDQNHHRRHHHHHPNYEAKLHHNMNAGMGGSDRMTRDFLGVGQIVRSVSGGFQQREKQQQQHGGVIDVSSLDSERNITAPTSQSFGGGGGGGGGSFH*