Information report for Cc07_g04000
Gene Details
|
|
Functional Annotation
- Refseq: XP_027151144.1 — uncharacterized protein LOC113751362
- TrEMBL: A0A068U189 — A0A068U189_COFCA; Uncharacterized protein
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn293031, Achn244501, Achn256561
- Daucus carota: DCAR_025415
- Juglans regia: WALNUT_00001116-RA
- Manihot esculenta: Manes.02G053200.1.p
- Nicotiana tabacum: XP_016446098.1, XP_016452894.1
- Populus trichocarpa: Potri.017G091800.1
- Prunus mume: XP_008230999.1
- Prunus persica: Prupe.3G257500.1.p
- Ricinus communis: 29630.m000796
- Sesamum indicum: XP_011098722.1
- Solanum lycopersicum: Solyc02g088670.1.1
- Solanum melongena: Sme2.5_00368.1_g00013.1
- Ziziphus jujuba: XP_015879805.1
Sequences
CDS Sequence:
- >Cc07_g04000|Coffea_canephora|C2H2|Cc07_g04000
ATGGAAGAAGTTCAAGAACAGAAGTTTGTATGCAAGTTTTGCAACAAGTGTTGCTTCAGCGGTAAGTCATTAGGTGGTCATATGAGGCGTCACCTAGCTTTGATTGCTGCTGCAAAAAAGGAGAAAGTGAAAGCCGACATCAACGCGGGTTTTGGAGGAGGTTATGATCATGATGACCATCATGATCATGAAAAGGTCGACAATCACAGCAGCAGCATGAATCTTGAAAACGATGATCATGATCAAGATCAAGATAACTATGGCCTAAGAGAAAACCCTAAGAAATCTTGGAAGATTTCTGATTTAAGGGCCTGTGGTCCTCCAAGAAAAGGAAATATTTGCAAAGAATGTGGGAAATGGTTTCCCTCATCAAGGGCTCTGGCAGGTCATATGAGGACTCACTCTGGGAAATTCAAGGGTCGACATCCTTGCAAGAAATGCGGCAAAGCTTTTGATTCAATGAGAGCAATGTATGGGCATATGAAAAGCCATCCTAAAAGATCAAGGGTCTCCTCTGAATCTGCAGACGCCATATCAGATTTTGACATTGTGTATCCAAGGAAGAAGAGATCAGTGATGAGGTACAAATCTAGTCACAGTTTCTCCTATTCTACTGCAAATGCATCATCTTCTCTTAATGAGAATGATGAAGTAGAAGATGCTGCTATCTGCCTGATGATGCTTTCGAGGGGTGTGAGCAATTGGGATGGAGTTGATTGCCCTCTTGTGTATACTGATAATGCTACCTCTGCATATTTTGAAGCCAAGTCAGTTTCTCTTCCAGAGGAAAGCACTAAAGTTGATGCAGAAGATGTTGTAGGTAATCCAGATGAGGTTGAAATGCCAGAGAAGCCAATAGAAGAGCTATATTCTTGCTTTTTTGGGTCGGCTAACTCTCTGTCTAACCAGAATGTATCTCAATTTAACGAATTGAGCTCTGAATTTGCCAGTGGCAATGAGAAGAAAGCTGAATTGGAATTTCGTGTTTATGAGCCTCTCTGCAGAGGTGAACCCAATGAGTCTAGGCTGCTTGATGTATCTGGTGTTGAGTTGGATGGCTCTGATTCTGCTGGAGTAGTTGAACCCTTGAAGGATCAAAGTAAGGCAGTTGGAATGGATCAAGAAGATATACAATTGATGGATCCTAATCCATGCAAGAAAGTAGAGATCAATGCTCATGCTCCAGAGTTAGAGATATGTTCTTCCGACAGAGCAGATACTGCTGATGAAATCTTCAAGATTTCAGAAAAGAAACGAGAGTACAGATGCAGGGCCTGCAACATGAGCTTTAGCTCGCATCGAGCTCTGGGAGGTCACAGCAATAAACATAAAACAAATGGTCATTGCTCTGCTTCGGGCACAGAGTCCAGCCATCTGACTGATATTGAGTGCAATGGCACTTCGGCTGAGGCTGGTAGTGATGGAGTGGCCATGGCAGATTTGCAGTTGACTAAAACCAAGGACCATGAGTGTCCTATATGCTTCAAGGTTTTCTCCACAGGCCAAGCTCTAGGTGGTCACAAGAGGGCACATTATGCTGGTTTTAGTGAGAGCAGAACTAAAGAGATGACAGCTGCAAATCAGGAGCTTCGTGATATTCAGAATGTCTTTGATCTGAATCTCCCAGGAATCACTCATCCAGGGGCCAGAGATGATGGTATTAGCCTCAAGGCATGGTATGAGCCCCTGCGAGCCCAAGTCTTGGACACTTTGTGTGGCCGTCATACTATAACTTACTCCCTTCCGTCCCACTTTGATATTCAACCACCTGGGGTTGATCCCAGCACGCCTGTGACTGTGAAGCCGATTGGCAGCCACGTTCCTTCTGGTTATGAAGCGCCCCAACTGAGCTTGGCCTACACTTATTCCCAGGCCATGGCCTCTGCCTCTGCTCCCTATTATCAAGATCCAAACGCTGCTATTACGCCGTATTGTTTGAATACTTATGCTGAGGGTATAACAATGCCTTCAACTGCTGCACAGAAACTGGTGACCGCCAATTCAGGTTCCATTTTATGGACCAACTCGACTACTGGTTCACACAAAACTAGTGCTTGGAAAAAGTGCCCCAAGAAAATAAAGGTTGTACAATCTGCCTGGTGTGAGATTTGTAGAGTTGACTGTAATAGCAAAAACGTTCTTGACCAGCATAAGTTGGGAAAGAAACACAAGAAGAATCTGGAGAAATTAATAGTAGCAAATACAAGCATGGTGGCACCTGCTACTATTTCAGCTTCTGTTCCTCCTGCTGCGTCAACAGTTTCTGATAACCCAGTGATTGGACCGCAGGAAAACCCTGATAAGGCAAAATCTGCGGTTAGCCAAAATGGGCGTAAGAAAGCAGCGGATGCCGAGGATTTGGAGACAAAGAGGAAAAAAATTGTGGAAGGAGGGGCAGCAGTAGATGCTGTCCGAACATGTGCCATATGCAATGTGGTTTGCAATAGTGAGACAGTTTTTAGATATCATCTTGCTGGTCAAAAGCATGCTGCCATGATGAAGAAGCATGCTCAGCATGCTTTTGCAACAGGAGTGGCTGCTGCCACCTAA
Protein Sequence:
- >Cc07_g04000|Coffea_canephora|C2H2|Cc07_g04000
MEEVQEQKFVCKFCNKCCFSGKSLGGHMRRHLALIAAAKKEKVKADINAGFGGGYDHDDHHDHEKVDNHSSSMNLENDDHDQDQDNYGLRENPKKSWKISDLRACGPPRKGNICKECGKWFPSSRALAGHMRTHSGKFKGRHPCKKCGKAFDSMRAMYGHMKSHPKRSRVSSESADAISDFDIVYPRKKRSVMRYKSSHSFSYSTANASSSLNENDEVEDAAICLMMLSRGVSNWDGVDCPLVYTDNATSAYFEAKSVSLPEESTKVDAEDVVGNPDEVEMPEKPIEELYSCFFGSANSLSNQNVSQFNELSSEFASGNEKKAELEFRVYEPLCRGEPNESRLLDVSGVELDGSDSAGVVEPLKDQSKAVGMDQEDIQLMDPNPCKKVEINAHAPELEICSSDRADTADEIFKISEKKREYRCRACNMSFSSHRALGGHSNKHKTNGHCSASGTESSHLTDIECNGTSAEAGSDGVAMADLQLTKTKDHECPICFKVFSTGQALGGHKRAHYAGFSESRTKEMTAANQELRDIQNVFDLNLPGITHPGARDDGISLKAWYEPLRAQVLDTLCGRHTITYSLPSHFDIQPPGVDPSTPVTVKPIGSHVPSGYEAPQLSLAYTYSQAMASASAPYYQDPNAAITPYCLNTYAEGITMPSTAAQKLVTANSGSILWTNSTTGSHKTSAWKKCPKKIKVVQSAWCEICRVDCNSKNVLDQHKLGKKHKKNLEKLIVANTSMVAPATISASVPPAASTVSDNPVIGPQENPDKAKSAVSQNGRKKAADAEDLETKRKKIVEGGAAVDAVRTCAICNVVCNSETVFRYHLAGQKHAAMMKKHAQHAFATGVAAAT*