Information report for Cc06_g03810
Gene Details
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Functional Annotation
- Refseq: XP_027070014.1 — zinc finger protein JACKDAW-like
- TrEMBL: A0A068UDX2 — A0A068UDX2_COFCA; Uncharacterized protein
- STRING: POPTR_0006s13130.1 — (Populus trichocarpa)
- STRING: XP_009781290.1 — (Nicotiana sylvestris)
- GO:0010075 — Biological Process — regulation of meristem growth
- GO:0045604 — Biological Process — regulation of epidermal cell differentiation
- GO:0048364 — Biological Process — root development
- GO:0051302 — Biological Process — regulation of cell division
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0042803 — Molecular Function — protein homodimerization activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Juglans regia: WALNUT_00017188-RA, WALNUT_00017194-RA
- Manihot esculenta: Manes.08G005700.1.p, Manes.09G069600.1.p
- Nicotiana benthamiana: Niben101Scf05486g00005.1, Niben101Scf06397g04009.1
- Nicotiana tabacum: XP_016463819.1, XP_016463820.1, XP_016466522.1, XP_016461792.1
- Petunia inflata: Peinf101Scf02156g00010.1
- Populus trichocarpa: Potri.006G129300.1, Potri.006G129300.2
- Sesamum indicum: XP_011094681.1
- Vitis vinifera: GSVIVT01025658001
Sequences
CDS Sequence:
- >Cc06_g03810|Coffea_canephora|C2H2|Cc06_g03810
ATGCTAGTCATGTCTGCAAATATGTTTACAGTTCCCCCTTCAGTCAATGGCTTTTCTCCAGAGCCAGCTGATACGAACCCTACTAGCAGTAATTCCAATCCCAAATCCAACTCCACCACCACTAACCCAGCTGGCAAAAAGAAGAGAAATCTACCAGGAAACCCAGATCCAGATGCTGAAGTTATTGCTCTCTCGCCCAAGACCCTTATGGCAACGAACAGATTCATATGCGAAATTTGCAACAAGGGTTTCCAAAGAGAACAAAACTTGCAGCTTCATAGAAGGGGGCACAATCTTCCATGGAAGCTTAAACAAAGGACTACTAAAGAGCAAGTGAAGAGGAAGGTGTACATATGCCCAGAAAAGACATGCGTCCACCACGACCCGTCTCGAGCACTCGGGGACCTCACCGGGATAAAGAAGCACTTCAGCAGGAAGCACGGGGAGAAGAAGTGGAAGTGTGAGAAATGTTCAAAGAAGTACGCAGTTCAATCGGACTGGAAAGCTCATTCTAAGACTTGCGGGACTAGAGAGTATAAATGCGACTGTGGAACGCTCTTTTCCAGAAAAGACAGCTTTATCACGCATAGAGCTTTCTGCGATGCCTTAGCTGAAGAAAGTGCAAGAATTACTTCTGTTGCGGCCAATAATTTCAACTTCAAAACTGATCAGCAGCATTTAAATGGTGGTGCTCTGCTAAATCATCCGGGTAGTTTTCCTCACGGACTGAGCGGTCCGTCTGGGATTTCACAAATTGGGGTAGACTTTGCAACTGGAAATCAGCTCAAGCCTAGACTTTCATTGTGGTTGGATCAAGCTAGCAATCCTCAGCTCAATCACGCTGATATGCCCCCAAGCCAAAATCTTTACATGCCCTCGGCTTCACACCATGACATCATGCAAATGTCGTCGGCTGCTGATGTCTTTGGCAATTATGGCATGCCTTGGCAGCAGCTGGAAAAGAGTAGCGCACCACCGTCATCAGCATCATCGTCTTCCGCAGCAAATCTCTCCTTATCGCCGATGATGCCCCAGCAAGTCTTAAAGGATGAGGGAGCCGGAGGCAGCATTAACACCCAAACCCTTTCTTCTTTGTACTCCCCTAGTGCTGCCAGTAACAATGATATCAGTCATTCAAAATCTTCGGCGACGCCAATGTCGGCCACTGCCCTTCTCCAGAAGGCAGCTCAGATGGGGTCATCTAAAAGCACCGCAGCAATCTTCGGCAATGGCTTCGGCATAATGAACCCCTCCTCTTCGTCGTCTTCTCCTGCTGTTGCTGCTAATATGATTGCCCCAGCAGCTTTTAGCAGTGGTTTAGCGCAAAATAGGACAGAGATGATGCAGGTTTTCGGGAAGCAAACGGACAATATGATGGGCGGGGGTTCGAATATGACTTCGTCAACCAGTTCCACGTTAACCAATAATCTGGATCATCAGCCCATGGTGCAAACCAGTACTGTCGCAGACAGCCAAACTGTGGCTTCCTTGGGCGGTTTTCATCGTCACCCGGGATTCAATGCAGTCGTCGAACACGCAAGTCTAACCAGAGATTTTCTTGGAATGGGTGGAGACGGCGGACGTCCTTTCTTGCCACACGAGCTTGCGAAATTTGCCTCAATGAGTTCAGCCATGGGTTTGGGGCATTTCAGCAGCAATCACTAG
Protein Sequence:
- >Cc06_g03810|Coffea_canephora|C2H2|Cc06_g03810
MLVMSANMFTVPPSVNGFSPEPADTNPTSSNSNPKSNSTTTNPAGKKKRNLPGNPDPDAEVIALSPKTLMATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRTTKEQVKRKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVAANNFNFKTDQQHLNGGALLNHPGSFPHGLSGPSGISQIGVDFATGNQLKPRLSLWLDQASNPQLNHADMPPSQNLYMPSASHHDIMQMSSAADVFGNYGMPWQQLEKSSAPPSSASSSSAANLSLSPMMPQQVLKDEGAGGSINTQTLSSLYSPSAASNNDISHSKSSATPMSATALLQKAAQMGSSKSTAAIFGNGFGIMNPSSSSSSPAVAANMIAPAAFSSGLAQNRTEMMQVFGKQTDNMMGGGSNMTSSTSSTLTNNLDHQPMVQTSTVADSQTVASLGGFHRHPGFNAVVEHASLTRDFLGMGGDGGRPFLPHELAKFASMSSAMGLGHFSSNH*