Information report for Cc03_g09160
Gene Details
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Functional Annotation
- Refseq: XP_027164482.1 — protein IWS1 homolog A isoform X1
- TrEMBL: A0A068V3A2 — A0A068V3A2_COFCA; Uncharacterized protein
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arachis hypogaea: Ahy013821, arahy.Tifrunner.gnm1.ann1.52QBHW
- Citrullus lanatus: Cla021859
- Cucumis melo: MELO3C006781P1
- Cucumis sativus: Cucsa.251920.3, Cucsa.251920.4, Cucsa.251920.1
- Manihot esculenta: Manes.05G199100.1.p
- Medicago truncatula: Medtr8g081010.1
- Populus trichocarpa: Potri.014G146200.2, Potri.014G146200.1
- Prunus mume: XP_016647855.1, XP_016647854.1, XP_008222781.1
- Prunus persica: Prupe.1G170500.2.p, Prupe.1G170500.1.p
- Pyrus bretschneideri: Pbr016519.1
- Ricinus communis: 30157.m000816
Sequences
CDS Sequence:
- >Cc03_g09160|Coffea_canephora|C2H2|Cc03_g09160
ATGGATGTTCAAGATCACAAAAAAACCCCTTCATCAGCAGGAGGGCATGAGGGGCATGGGGTTCATGTGTGCCACAAGTGTGGTTGGCCTTTCCCAAATCCACATCCCAGTGCCAAACATAGGAGAGCCCACAAAAGGGTTTGTGGAAAAGTTGAAGGTTATAAATTAGTTGACTCAGAAACTGACCATATATCTGATGATGACCATCTTTCTGATGACGATATTGTGAAAACCCCAAGTCCCAAGATGGAGAAAGGAAGTGTGAAGGAGGTTGGGAGTGGTGCAGGTATTGGTCTGAAGTCAAGTAAATCAGAAGATGATGTGTTTTCAGATGCAGTCACGGAATTTTCGGATAGTGGGATTAGTCCAAGCATAGAAGAGCGCCTGGAGAGTGTTAGAGAAGTTGATAACACTGTGGGAGCAGAACTGGTGCATGAGCTAAATGATAGCCAAAAATCTGAGGATTGTCGAGCTGATGATACGACCAAACAACTGGATGATTTGACAACAGGTAGGGAAATCTCCAACGCTGAGGTTGTTGAAAGTGTAATTAACGAGGCAGAGAATACTAAGCCTGCAAGTGATAACAGAGCTGAAGAAGTTTCTTTTGGAGTTGAACAAACAGATGGTCTTCAGATCAATTCTTCTCCTAATGTATTTGAGACTATTTCAGAGGACTTAGTTGCAAATGCTGAGAGTGGCAAACAGAAAGAGATCGGTTCTTCTAAATCGGAAACCAATATACAAGTGAAAGAAAGTGTTAATGAGGTTGAATCCTCCACAGAATCTGTAGTCCTTCTTAGCAAGTCTCCAGATGAAGCATCTCTAAGTAAGTCTAAGTCAGATGTTGCAGAAGGAAGTTCTGGTTGTTTGGTAGTGGAAACAATGGAACACGAAGCAGACCGAAAAGTTTCAGATACTATGACCATGGAACCTAAGTTGCATGAGGCCAGTGGAAGTATATCACATGCTGCAGCAGTCAAAGAAATTGTTGAACAGGAGAAAGAGCCGAGTAACAAGTCGGAAGCTAGGATGACAAGTGTTTCCACCATAAATGAAATTATTGAACAAGAGAAAGGGTTGTCTAATGTGTTACAGGCTGAGATGACCAAAGTTGATCTCCCCTCTCAAACTGAGCCTCATAAATGCACAGATACTTCAGTTACTACTCAAGCTGAAGCTGATTCTGCGGGGGATACAATACGAGTTGGTCATGATGAGTTGGCTAAGGTTTGTGATTTGAAGGAAGGAGGGGATAAAGAGGTGCATGTAGTATCAGTTGCTGAAACTTTACCTATGGTAGAAAATCCTGAGATCATGATTGGAGATTTTAAAGACTACAAAGTTTTAAGATCCAGTTTTCCTGTGGATCTAGGGGATGCTGAAGTTACTAGGTCTGGGGAAGATGCTAACAAAGTCAACCTGCCTGAGTCTGTCCTGAGTCCCAGTTCAAGCGTCCCTGTTGGAAGGTTGCACACCTCTAATTTAAATTCTAGTTGTTCAGAAGCTAGTCTTGAGAAAGAAGGCCTTTTAACACCTGTTCAAGGGGAAGTTGATACTTCTGGGTTAAGGGGGATCAGTGAAGAAGGCTCTGGAAGTAATGGCCTGGAAGGTTCTTCAGTGAATTCTGGTTTTGAAAAACAGGTTATTGAAGGATGTCAACCTAAACCGACTGATAAAGAATCATCACAAGATGGAGTTTCAGCACCAAGCTCAATTGAACATTCTGATGTGATGCGTGCTGTGTCGTCCATTGATGAAGAATTCAGCAGTCAAACAACCAAATTAAGTAACTTTGATAATGATGTAAACTTGAAAAGTGATCATGTGAGGTCAGAAAATGGAACAGATCACCTGTTGGATGAGGATAATATTTCAAGTTCTAAGAAATGCACAATTGAAGTTGATGTGGAAACCTCACAAGGAACTGAAACAGGTAGGAGCACTGAAGTACAAAGGTCTGAAGGTGTATTTGTCGTGGATCCTGATTTAATTCCTGAAGGCCATAGTGTAGCATCAGGTGAACAATCAGAAAATCCTAAGGAGATGGAAGCACAAATTTCCAGTTCAGATTCTCAATTAAAACCTGAAGATCATGGTGGAGCATCTGACAAAAAATCAGAAGATTATAAGGAGGCAGCAGGTTTGCCTGTAGCTTCTACAAACTCAAGCCAAAGTTCTGCTACTGTTGAAGACAAAATTACCAATGATGCAGTCACTTCTGAAATAGGTAAGAGCACTGAAGTACAAAGGTCTGAAGATGTCTTTGTCGTGGATCCTGATTTAAGTCCTGAAGGCCATAGTGTAGCATCAGGTGAACAATCAGAAAATCCTAAGGAGATGGAAACACAAAGTTCCAGTTCAGTTTCTCAATTAAAACCTGAAGATCATGGTGGAGCATATGACAAAAAATTAGAAGATTATAAGGAGGCGGCAGCTTTTCCTGTAGCTTCCACAATATCAAGCCAAAGTTCTGCTACTGTTGAAGACAAAATTACCAATGATGCGGTCATTTCTCAGCCCTTGCTAGATGGAGACAATGGCAAGCTCACAAAAGAAAGTGTACACGTTTCTGCGGTTGATGACTCCGTTGTTTCAAGCAGCCGAACTGAGAGTTTGGATGGGAACTGGGGATCAGTATCAGTACTTTCTACCCAGTCAGATGGGACAGCTCTTGTGGATGCTGAAACACTATCTTCAGCTGGTAATCAGGGACCAGAGAAATCTGGGGTCATGTCATTAAAGCTGCAAACTCCGTCTCAGGATAGCCATCCTGACAAGTCAGATGCTTTTGAGCCTCCATCTTTCATGACATTGGTTGAATCTCGGGTCGAGGATGACAAGAAAGATGTGGCCACAGAAACACATAATATCCAGAAGACTGAACAGCCAAATTCTGAAGCTTTACAGGCTGGCTGGTTTCCATCTCTAACCAATGTCGTTAATGAATCAGAAGGCAGAAAGAAAAATGAAGAGATTATTGCCAAGGTAACAAACTGGAATGCAGGGAAGCAGCACAGTCCTTTGAAGAATCTTCTGAACGAAGCTCAAGCTGAAACAAAGGTGAAATCAGCTGACCAGAAACAAGTTCCTTCTGTGAATCAGGGCAACGAGACTGTCTCGAAGAACAATGGTGCTGCAGTGACTACTGTTGGCTCAATTATGGGATCAGAAACGCCAGTTGACAATGCTGCCAAGAGGGACATGGAGAAGGAATGGAATTCCCCAGCAAGATACCCAGTTGAGATCAAGAAAGAAAAAAAGAAGGGAAAACCATATTGGGTACCATTTGTGTGCTGCACTTCCATACACCAAGACTTGTAA
Protein Sequence:
- >Cc03_g09160|Coffea_canephora|C2H2|Cc03_g09160
MDVQDHKKTPSSAGGHEGHGVHVCHKCGWPFPNPHPSAKHRRAHKRVCGKVEGYKLVDSETDHISDDDHLSDDDIVKTPSPKMEKGSVKEVGSGAGIGLKSSKSEDDVFSDAVTEFSDSGISPSIEERLESVREVDNTVGAELVHELNDSQKSEDCRADDTTKQLDDLTTGREISNAEVVESVINEAENTKPASDNRAEEVSFGVEQTDGLQINSSPNVFETISEDLVANAESGKQKEIGSSKSETNIQVKESVNEVESSTESVVLLSKSPDEASLSKSKSDVAEGSSGCLVVETMEHEADRKVSDTMTMEPKLHEASGSISHAAAVKEIVEQEKEPSNKSEARMTSVSTINEIIEQEKGLSNVLQAEMTKVDLPSQTEPHKCTDTSVTTQAEADSAGDTIRVGHDELAKVCDLKEGGDKEVHVVSVAETLPMVENPEIMIGDFKDYKVLRSSFPVDLGDAEVTRSGEDANKVNLPESVLSPSSSVPVGRLHTSNLNSSCSEASLEKEGLLTPVQGEVDTSGLRGISEEGSGSNGLEGSSVNSGFEKQVIEGCQPKPTDKESSQDGVSAPSSIEHSDVMRAVSSIDEEFSSQTTKLSNFDNDVNLKSDHVRSENGTDHLLDEDNISSSKKCTIEVDVETSQGTETGRSTEVQRSEGVFVVDPDLIPEGHSVASGEQSENPKEMEAQISSSDSQLKPEDHGGASDKKSEDYKEAAGLPVASTNSSQSSATVEDKITNDAVTSEIGKSTEVQRSEDVFVVDPDLSPEGHSVASGEQSENPKEMETQSSSSVSQLKPEDHGGAYDKKLEDYKEAAAFPVASTISSQSSATVEDKITNDAVISQPLLDGDNGKLTKESVHVSAVDDSVVSSSRTESLDGNWGSVSVLSTQSDGTALVDAETLSSAGNQGPEKSGVMSLKLQTPSQDSHPDKSDAFEPPSFMTLVESRVEDDKKDVATETHNIQKTEQPNSEALQAGWFPSLTNVVNESEGRKKNEEIIAKVTNWNAGKQHSPLKNLLNEAQAETKVKSADQKQVPSVNQGNETVSKNNGAAVTTVGSIMGSETPVDNAAKRDMEKEWNSPARYPVEIKKEKKKGKPYWVPFVCCTSIHQDL*