Gene Details:

  • Gene ID: CA03g25230
  • Gene Family: C2H2 family
  • Description: C2H2 family protein
  • Species: Capsicum annuum
  • Source: C2H2 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_016563761.1  — PREDICTED: lysine-specific demethylase REF6
  • Swissprot:  Q9STM3  — REF6_ARATH; Lysine-specific demethylase REF6
  • TrEMBL:  A0A1U8FXA8  — A0A1U8FXA8_CAPAN; Lysine-specific demethylase REF6
  • TrEMBL:  A0A2G2ZW03  — A0A2G2ZW03_CAPAN; lysine-specific demethylase REF6
  • STRING:  PGSC0003DMT400039224  — (Solanum tuberosum)

Gene Ontology:

  • GO:0009741  — Biological Process — response to brassinosteroid
  • GO:0009826  — Biological Process — unidimensional cell growth
  • GO:0010228  — Biological Process — vegetative to reproductive phase transition of meristem
  • GO:0033169  — Biological Process — histone H3-K9 demethylation
  • GO:0035067  — Biological Process — negative regulation of histone acetylation
  • GO:0048366  — Biological Process — leaf development
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003676  — Molecular Function — nucleic acid binding
  • GO:0046872  — Molecular Function — metal ion binding

Family Introduction:

  • Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.

Literature:

Sequences:

CDS Sequence:
  • >CA03g25230|Capsicum_annuum|C2H2|CA03g25230
    ATGGCAGAGGCAAGTGGTAACATTGAGGTATTTCCATGGCTAAAAACCCTACCAGTAGCACCGGAGTATTACCCAACCCTAGAAGAATTTCAAGATCCCATTGCTTACATTTTCAAGATCGAAAAGGAAGCTTCTAAGTATGGAATTTGCAAAATTGTACCCCCACTACCTGCTCCTAAGCAAAAAACCGCTCTTGCTAACCTCAACCGGTCACTCTCAGCTCGGCCCGGTTCTAATGGTCCAACATTCACTACTAGGCAACAGCAGATCGGGTTTTGCCCCAGGAAACACCGACCCGTTAAGAAACCCGTTTGGCAGAGCGGCGAGACATACACGGTTCAGCAGTTTCAGGCCAAAGCTAAAGCCTTTGAGAAGAATTACTTGAAGAGGAATTCCAAGAGAGCGTTAACCGCTTTAGAAATCGAAACCCTTTATTGGAAGGCTACTGTGGATAAACCCTTCTCGGTGGAGTATGCAAATGACATGCCAGGTTCTGCATTTGCCCCGAAGAAGGCGGGTTCGGGCTCTGTGGGGGCAGGGGGTATAGGGGAGGTGGCTACACTGGCGGATACAGAGTGGAATATGAGAGGCGTGTCGAGGTCGAAAGGGTCTTTACTAAAGTTCATGAAGGAGGAGATCCCTGGGGTAACTTCACCTATGGTGTATCTTGCTATGATGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGACTTGCATAGCTTGAATTACTTGCATATGGGTGCTGGTAAGACTTGGTATGGTGTGCCTAGGGATGCAGCTGTCGCGTTCGAGGAGGTGATCAGTGTCCAAGGTTATGCTGGAGAAACTAATCCTCTTGTTACCTTTGCTACACTTGGGGAGAAGACCACAGTCATGTCACCAGAAGTACTGCTTAGTGCTGGTATTCCATGCTGCAGGCTGGTGCAAAATGCTGGAGATTTTGTTGTTACCTTTCCTCGAGCCTATCACTCAGGGTTTAGTCACGGATTTAATTGCGGGGAGGCTTCTAATATTGCTACACCTGAGTGGTTGAGATTTGCAAAAGATGCTGCGATCCGTAGAGCATCAACTAATTGTCCTCCAATGGTGTCACATTTCCAGTTGCTTTATGATCTAGCACTTTCGCTATGTTCAAGAGTACCAAAGAACATTAGAATAGAACCAAGGAGTTCTCGCCTGAAGGACAAGAAAAAGAGTGAAGGAGATATGTTGGTCAAAGAATTATTTGTTGAGGATTTGAACAGTAACAATTATCTTCTTCACGTTCTTGGAGAAGGATCACCCGTTGTACTTCTCCCTCAAACGTCTACAGGGATTTCTATTTGTTCTAATTTAGTAGCTGGAACCCAGTCAAAGGTAAATTCCAGGTTGTTCCTCGGTTTATCCAGTTCAGATCATGAGTTGAGGAGTCAAAAAGATATCGGATATGATCATTTCAAGCTAGGCAGGAAACAGGGGATGAAACAAGTTGCAAGTGTCTCTTCGGAGAAGGGAAAGTACTCTTCTTTGCACGCTGGTAACAGACTACCAGACTCTGGCAGAAAGGATGATGCCCAATCCTCTCCAGAGACCGAAAGGGTGAACCTGGACACTGGAAGAGGAATGACTCACAAATGTGATACACTGTCAGAGCAAGGGCTTTTTTCTTGTGTAACTTGTGGGATCCTATGTTATACGTGTGTGGCCATAATTCGACCAACAGAAGCAGCTGCTCATCATTTGATGTCATCTGATTATCATAACTTCAATGACTGGACAGGAAATGTAGGTGGCGTATTTGCTACAGGAAGGGACCCAAATGCTGGCGAGTCAGATTCCAGTTCAGGAGGGTTAGTTAAAACGGCTCCAGGTGACTTCATTGATGCCCCAGTAGAGTCATCTGATCGAATTCAGAAATTGAATAATGGAAGTGTAGAAGGGGTTTCAAGGACCAAAGCACGCAAAGAAACTTCTTCCCTCGGCCTGTTGGCTTTAGCTTATGCCAATTCGTCAGATTCTGATGAAGACGAGGTTGAAGCAGATATTCCTGTTGAAGCTTGTGAAAGCAGACATACGGATTCCGATGATGAGGTTTTTCTCCAAGTTATTGATCCTTATGCAAACCATAGACAAAGAAGAGCTGTATCTCAAGGTAGAAGCTGTCAAAAAATTGACAATTCTTCCCCATCAGGGGAGTCAAATACTTTGTTCGGTAGGTCAAGCCATCAACTAAGATCCAATCAAGTCACTGCAAAGTGTATTTCCAATAAAGGGGAAATAGCACAAAACAATGCTGTTGCTCCCTTTGATAACACACATATGCAATTTACTTCAGCATCTGATGAAGACTCTTTCAGAATACATGTATTCTGTCTCCAGCATGCTGTACAAGTAGAAGAAAAGCTCCGTCAAATCGGTGGAGCTGATATTTCTCTTCTTTGTCATCCAGACTATCCCAAGCTAGAAGCTCAAGCTAAAAAAGTGGCTGAAGAGTTGGGGAGTGATCATTTTTGGAGAGATATTTCATTCCGCGAGGCCACTAAAGAAGATGAGGAAATGATACAATCAGCTTTGGAAATTCAAGAAGCTATACATGGCAATGGGGACTGGACTGTGAAACTAGACATCAACCTCTTCTACAGTGCCAATCTAAGTCGTTCTCCTCTCTATAGTAAACAGATGCCTTATAACTTCATTATATACAATGCATTTGGTCGTGATTCTCCAGATAATACCCCAGAAAAATCGGAGTATACTGGGAGAGGGTCAGGGAAGCAGAGGAGAGCAGTTGTTGCTGGGAAATGGTGTGGGAAAGTCTGGATGTCTAGTCAGGTTCATCCTCTGCTTGCTGAGAGGGATATTGATGAAGAACAAGAACAGAACAAAAACATCTCAGTCCAGATTAAGACTGAGGTGAAGTCTGAGAGACCACGCGAAAGGACTGTGACTGGTAAAACTGTTGCTACAACTTGCAAGACTGGTAAAAAGAGGAATAGTACAGCAGAAGATAGGAATGCTTCAAACACCCAATTAATCGCAGATGATCATGATGATTCTTTACTTTGTAGTCTCCTTCAGCAACACCGGAAAACTAATTTTAGGAGTAAGAGGATTAAATATGAGACTCCTGAACCTCAAAAGGATGTTGATAAGAAGAAGAGATTTGGCTCTCTCATTGATGATGATCCAGATGGTGGGCCTAGCGCCCGTCTGAATGTTGATAAGAAGAAGAGATTTGGCTCCCTCATTGATGATGATCCAGATGGTGGGCCTAGCACCCGTCTGAGGAAAAGGGTTCCAAAACCGAGCAAAGTGTCGGCTGCCAAGTTGATTAAGGCCAAACCAGCTACAACTAAGCAGGAAGAAAGCAAGAAAGGTCCTAAGGTCAAACTTCCGTCTGTAAATAGCACTGCAAAGAAAGAACCAGTAATGAAGTCTCCTAGAAGTAATACGGGTAGAAAGATGAGGGATAAGGAAGGCGAATATCATTGTGACTTGGAAGGGTGCAGTATGAGTTTTAGCTCAAAACCGGAGCTTACATTGCACAAAAAGAATGTCTGTCCTGTCGAAGGGTGCAAAAAGAAGTTCTTCTCGCACAAGTATTTGGTACAGCATCGGCGAGTTCATATGGATGACCGTCCTCTGAAGTGCCCTTGGAAGGGCTGCAAGATGACATTTAAGTGGGCATGGGCTCGAACTGAACATATAAGAGTTCATACAGGTGCACGTCCTTATGTTTGTGCTGAGACCGGCTGTGGTCAGACATTTCGTTTTGTGTCAGATTTCAGTCGTCACAAGCGTAAGACAGGTCACGTTTCGAAGAAGGGGAGAGGCTGA
Protein Sequence:
  • >CA03g25230|Capsicum_annuum|C2H2|CA03g25230
    MAEASGNIEVFPWLKTLPVAPEYYPTLEEFQDPIAYIFKIEKEASKYGICKIVPPLPAPKQKTALANLNRSLSARPGSNGPTFTTRQQQIGFCPRKHRPVKKPVWQSGETYTVQQFQAKAKAFEKNYLKRNSKRALTALEIETLYWKATVDKPFSVEYANDMPGSAFAPKKAGSGSVGAGGIGEVATLADTEWNMRGVSRSKGSLLKFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVISVQGYAGETNPLVTFATLGEKTTVMSPEVLLSAGIPCCRLVQNAGDFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRFAKDAAIRRASTNCPPMVSHFQLLYDLALSLCSRVPKNIRIEPRSSRLKDKKKSEGDMLVKELFVEDLNSNNYLLHVLGEGSPVVLLPQTSTGISICSNLVAGTQSKVNSRLFLGLSSSDHELRSQKDIGYDHFKLGRKQGMKQVASVSSEKGKYSSLHAGNRLPDSGRKDDAQSSPETERVNLDTGRGMTHKCDTLSEQGLFSCVTCGILCYTCVAIIRPTEAAAHHLMSSDYHNFNDWTGNVGGVFATGRDPNAGESDSSSGGLVKTAPGDFIDAPVESSDRIQKLNNGSVEGVSRTKARKETSSLGLLALAYANSSDSDEDEVEADIPVEACESRHTDSDDEVFLQVIDPYANHRQRRAVSQGRSCQKIDNSSPSGESNTLFGRSSHQLRSNQVTAKCISNKGEIAQNNAVAPFDNTHMQFTSASDEDSFRIHVFCLQHAVQVEEKLRQIGGADISLLCHPDYPKLEAQAKKVAEELGSDHFWRDISFREATKEDEEMIQSALEIQEAIHGNGDWTVKLDINLFYSANLSRSPLYSKQMPYNFIIYNAFGRDSPDNTPEKSEYTGRGSGKQRRAVVAGKWCGKVWMSSQVHPLLAERDIDEEQEQNKNISVQIKTEVKSERPRERTVTGKTVATTCKTGKKRNSTAEDRNASNTQLIADDHDDSLLCSLLQQHRKTNFRSKRIKYETPEPQKDVDKKKRFGSLIDDDPDGGPSARLNVDKKKRFGSLIDDDPDGGPSTRLRKRVPKPSKVSAAKLIKAKPATTKQEESKKGPKVKLPSVNSTAKKEPVMKSPRSNTGRKMRDKEGEYHCDLEGCSMSFSSKPELTLHKKNVCPVEGCKKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAETGCGQTFRFVSDFSRHKRKTGHVSKKGRG*