Information report for BGIOSGA036374-PA
Gene Details
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Functional Annotation
- Refseq: XP_015620626.1 — lysine-specific demethylase REF6
- TrEMBL: B8BP43 — B8BP43_ORYSI; Uncharacterized protein
- STRING: ORGLA12G0080500.1 — (Oryza glaberrima)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >BGIOSGA036374-PA|Oryza_sativa_subsp._indica|C2H2|BGIOSGA036374-PA
ATGTCGCTGCAGCCGCCGGCGGTGGAGCCGCCGGAGTGGCTGCGGACGCTGCCCGTGGCGCCGGAGTACCACCCGACGCTGGCGGAGTTCGCCGACCCCATCGCCTACATCCTCAGGATCGAGCCGGAGGCGTCCCGCTACGGCATCTGCAAGATCGTGCCCCCGCTCCCGCGGCCCCCCGAGGACGACACGTTCCGCCGCCTCCAGGACGCCTTCGCTGCCGCGGCCTCCTCCAATGGCGCCGGTGGCGACCCCTCCCCGACCTTCCCCACGCGGCTCCAGCAGGTCGGCCTCTCCGCCAGGAACCGCCGCGCCGCCAGCCGCCGGGTGTGGGAGAGCGGGGAGCGCTACACCCTGGAGGCGTTCCGCGCCAAGGCGGCCGAGTTTGAGCCCCCGAGGCACGCCGCGCCGCCCAGGAACCCCACCCACCTCCAGCTCGAGGCCCTCTTCTGGGCCGCCTGCGCCTCCAGGCCCTTCAGCGTCGAGTACGGCAACGACATGCCCGGCTCCGCCTTCGCCTCCCCCGACGAGCTCCCCGACGCCGCCAATGCCACCGACGTCGGGGAGACGGAGTGGAACATGCGGGTGGCGCCCCGCGCCCGGGGGTCGCTGCTCCGCGCCATGGCCCGCGACGTGGCGGGCGTCACCACGCCGATGCTGTACGTGGCCATGCTCTACAGCTGGTTCGCCTGGCACGTGGAGGACCACGAGCTCCACAGCCTCAACTTCCTCCACTTCGGCAAGGCCAAGACCTGGTACGGCGTCCCCCGCGACGCCATGCTCGCCTTCGAGGAGACGGTGCGCGTCCACGGCTACGCCGACGACCTCAACGCCATCATGGCCTTTCAAACGTTAAATGAGAAGACAACTGTCTTATCTCCTGAGGTGCTTCTTTCTGCTGGTGTTCCCTGCTGCAGATTGGTTCAAAAAGCGGGAGAATTTGTTATCACATTCCCTGGAGCTTATCATTCAGGCTTTAGCCATGGATTTAATTGTGGGGAAGCATCAAATATTGCAACTCCCCATTGGTTACAAGTGGCTAAAGAAGCTGCAATCCGGAGGGCTTCAACTAATTGTGGTCCGATGGTGTCTCATTATCAGCTGCTTTATGAGCTAGCACTCTCATTGCGTCCAAGGGAGCCTAAGAATTTCTATTCTGTTCCAAGAAGCTCACGTTTAAGGGACAAGAATAAGAATGAAGGTGATATAATGGTCAAAGAAAATTTTGTTGGAAGTGTAACCGAAAACAACAATTTGCTTAGCGTCCTTCTGGATAAGAATTATTGTATAATTGTTCCAAACACTGATTTCTTTGTTCCATCCTTTCCTGTTGCACTGGAATCTGAAGCTACTGTTAAACAAAGGTTTACAGCTGGTCCCTGCAGTATTAGCCAGCAAGGAGCAGAAAATATGGCTGTTGATCATGTGGCTGTAGACAAGGTTACAGATATTCAGGACATGAGTGGATCCTTATATCCTTGTGAAACCAGTCTTGTGGGCTGTAGCAATAGAAAACTTTATGAAACAAAATATGGCCAACGGGATGCTGCTGCTTTGTGCTTATCTACTTCAGAGATTCAGAGCAGAGGAATTGATAAAGCAAGATCACATCCAGCAGGCGGGATCTTAGATCAAGGACGGTTGCCATGTGTACAGTGTGGAATACTAAGCTTTGCATGTGTAGCCATCATTCAACCTAGAGAAGCAGCAGTACAGTTTATCATGTCTAAAGAGTGCATCTCATCAAGTGCAAAACAAGGAGGAATTGGTGCATCTGATGATACCTCAAACTGGATAGATCAGAGTCATGAGATTAGTCCTCCACCAGGTCCAGCATCTGGAACAGATGATAATGTAAAGCATGCCGTAAGTTTGGCCCATGTCTCTGATCGGTGTAGAGAACTATATGCCAGCAATACAGATGGATGCACCTCTGCTCTTGGGCTTCTAGCTTCTGCATATGACTCATCAGACTCTGATGATGAAACAACTGAGGATGTTTCAAAACATAGCAAGAAAAATGATTCAGTAAACCAAAGCACGGATCCTCAAATCTTGGAAATATCAGCTAGCTGTTCCAGTACAGTTCAGTGTCAAAAGACAAATTCACACTTGCATGAAGAGGAATGTGAGGCAAGAGCCACATCATTGATGAAACCTGTAAGCCATAATAGTAGGCCCATTAGTCAGTCTAACAGGGATACAGATATCGACCATTTTATAGAACTGGGAAAGTCAGGAACACAGTGTTCAGGTTATCTTGATTTGGTTGATGATCTAACTACATCAGTTTTAAAATCCTCTTCAGATACTTGTGTAAGTGCAGCTAAAGCCTCAATGGATCCAGATGTTTTGACCATGCTCAGAGAAAAAAAAACATGTGTTTACAACTACATGAGCAACTACACCAAGGGCATAAACTGCAAATACCCTAGAGCAGAGTCAGCAGCAAAAGTCATAGCAGAAGAACTTGGTATCAAGCATGATTGGAAAGATATCACTTTCAAAGAAGCAACTGAAGAGGACGTTAAAAAGATTCGGTTGGCTTTACAGGATGAAGATGCTGAACCCACAGGCAGTGACTGGGCAGTCAAAATGGGTATCAACATATATTACAGTGCCAAACAGAGCAAATCACCACTTTACAGCAAGCAGATACCATACAATTCCATCATTTATAAGGCATTTGGCCAAGAAAACCCAGACAGTTTGACAGATTATGGATGTCAAAAGTCAGGCTCAACAAAGAAAAAGGTGGCTGGGTGGTGGTGTGGGAAAGTTTGGATGTCAAATCAAGTTCATCCACTTCTAGCTCGTGAGCGTGAAGAACAGAACAGTAGTGTAGTGTACGGCAAAGCAATGTTCACTACTATTTCCCATGGCAAAGTACAAGATGAAGCGTCAACAAGATGCAATACAAGCAACCGAACCCCATCAAAAAGAACATCAAGAAGAAAAAAGGGGGTATCTGCTGAGAAATCTAAACCAAAAAACAAGAGATCCACTGCTTCTGATGAAGCTAGTATGCATTGCAGTGGCCTTGGGATGAACTCTGGAGTTATCCATGACCAAACTGAAAACTCTGATGATTATGACAAACATGGCAATGGAGATGAAATTGAGGAAGGAACAAATCCTCAGAAATATCAACAACGTAAATTGCAAAACGTGACCAGGAAATCAAGTTCTAAGAAGCGGAAGGATGAGAAAAGAACAGATAGTTTTCATGAACTATATGACGAGGATAATGGTGTGGATTATTGGCTTAACATGGGTAGTGGACATGATGCCACACTAGGTAACTCTCAACAACAAAGTCCTGATCCAGTGAAAGTGAAATCTGGTGGCAAATTGCAAGGTAAGAGAAAATCTAGCAAGTACAAGTCCAATGATGATTTGTTGAATGAAGAAAATAAGTTACAAAAGATGAACAAAAAATCAAGCTCTAAGAAGCAAAAGAATGATAAGATAAATAGACAACTTCAAGAAGATCAAACCGAAGATGACCATATGGACCACTTAGTTGACGTAGCGGTTGCAGATGAAGTCACACTAGACAATGAGGATAAAATTACAGAAGACAAAATTGATGACGTGAAAGTGAAATCTAGAGGAAAATCGCAAAATGGTAAGAGAAAAGGCAGCAAACATCAGGCTACCGATGGTTTGCGCGCTGGAAATAAAGTGGCCAAATTTCCGTGCGATATAGAAGGATGTGACATGAGCTTCAGTACCCAGCAGGACTTGTTATTGCACAAGCGTGACATTTGTCCTGTCAAAGGATGCAAGAAGAAGTTCTTCTGCCACAAGTACTTGCTTCAGCACCGGAAGGTGCATATAGATGAAAGGCCACTTAAGTGTACATGGAAGGGGTGTAAGAAGGCATTCAAGTGGCCATGGGCGAGGACGGAGCACATGAGAGTCCATACGGGGGTAAGACCTTACGAGTGCCAGGAACCTGGCTGTGGTCAGACATTCCGATTCGTTTCAGATTTCAGCCGCCACAAGAGAAAGACTGGCCATTCCTCTGATAAGAGAAGAAAGAACAGTACATAA
Protein Sequence:
- >BGIOSGA036374-PA|Oryza_sativa_subsp._indica|C2H2|BGIOSGA036374-PA
MSLQPPAVEPPEWLRTLPVAPEYHPTLAEFADPIAYILRIEPEASRYGICKIVPPLPRPPEDDTFRRLQDAFAAAASSNGAGGDPSPTFPTRLQQVGLSARNRRAASRRVWESGERYTLEAFRAKAAEFEPPRHAAPPRNPTHLQLEALFWAACASRPFSVEYGNDMPGSAFASPDELPDAANATDVGETEWNMRVAPRARGSLLRAMARDVAGVTTPMLYVAMLYSWFAWHVEDHELHSLNFLHFGKAKTWYGVPRDAMLAFEETVRVHGYADDLNAIMAFQTLNEKTTVLSPEVLLSAGVPCCRLVQKAGEFVITFPGAYHSGFSHGFNCGEASNIATPHWLQVAKEAAIRRASTNCGPMVSHYQLLYELALSLRPREPKNFYSVPRSSRLRDKNKNEGDIMVKENFVGSVTENNNLLSVLLDKNYCIIVPNTDFFVPSFPVALESEATVKQRFTAGPCSISQQGAENMAVDHVAVDKVTDIQDMSGSLYPCETSLVGCSNRKLYETKYGQRDAAALCLSTSEIQSRGIDKARSHPAGGILDQGRLPCVQCGILSFACVAIIQPREAAVQFIMSKECISSSAKQGGIGASDDTSNWIDQSHEISPPPGPASGTDDNVKHAVSLAHVSDRCRELYASNTDGCTSALGLLASAYDSSDSDDETTEDVSKHSKKNDSVNQSTDPQILEISASCSSTVQCQKTNSHLHEEECEARATSLMKPVSHNSRPISQSNRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKASMDPDVLTMLREKKTCVYNYMSNYTKGINCKYPRAESAAKVIAEELGIKHDWKDITFKEATEEDVKKIRLALQDEDAEPTGSDWAVKMGINIYYSAKQSKSPLYSKQIPYNSIIYKAFGQENPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVHPLLAREREEQNSSVVYGKAMFTTISHGKVQDEASTRCNTSNRTPSKRTSRRKKGVSAEKSKPKNKRSTASDEASMHCSGLGMNSGVIHDQTENSDDYDKHGNGDEIEEGTNPQKYQQRKLQNVTRKSSSKKRKDEKRTDSFHELYDEDNGVDYWLNMGSGHDATLGNSQQQSPDPVKVKSGGKLQGKRKSSKYKSNDDLLNEENKLQKMNKKSSSKKQKNDKINRQLQEDQTEDDHMDHLVDVAVADEVTLDNEDKITEDKIDDVKVKSRGKSQNGKRKGSKHQATDGLRAGNKVAKFPCDIEGCDMSFSTQQDLLLHKRDICPVKGCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDKRRKNST