Information report for AHYPO_010138-RA
Gene Details
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Functional Annotation
- Refseq: XP_021757771.1 — LOW QUALITY PROTEIN: protein indeterminate-domain 2-like
- Swissprot: Q9LVQ7 — IDD1_ARATH; Zinc finger protein ENHYDROUS
- TrEMBL: A0A0K9QGD0 — A0A0K9QGD0_SPIOL; Uncharacterized protein
- STRING: XP_010680830.1 — (Beta vulgaris)
- GO:0009937 — Biological Process — regulation of gibberellic acid mediated signaling pathway
- GO:0010029 — Biological Process — regulation of seed germination
- GO:0010431 — Biological Process — seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn254561
- Beta vulgaris: Bv6_137660_fwms.t1
- Fragaria vesca: mrna29562.1-v1.0-hybrid
- Gossypium hirsutum: Gh_D11G1873
- Juglans regia: WALNUT_00007357-RA
- Lotus japonicus: Lj2g3v1779750.1
- Malus domestica: MDP0000233477
- Manihot esculenta: Manes.S010100.1.p, Manes.13G137400.1.p
- Populus trichocarpa: Potri.007G028800.3, Potri.007G028800.2, Potri.007G028800.1, Potri.005G125600.1
- Prunus mume: XP_008241644.1
- Prunus persica: Prupe.7G151500.1.p
- Vitis vinifera: GSVIVT01019000001
- Ziziphus jujuba: XP_015890207.1
Sequences
CDS Sequence:
- >AHYPO_010138-RA|Amaranthus_hypochondriacus|C2H2|AHYPO_010138-RA
ATGCCGGCGGATTTAGATGTTTCTTCACCAAAAACCATGTCGAATAGTACTGGGCAAACTGGTGATGCAAGTATTTCTTCTAGCGCCGATCAAATTGAACCCTTAAAACCTCCACCTAAAAAGAAGCGTAATCAGCCTGGAATGCCTGATCCAGATGCAGAGGTGATTGCTTTATCACCAAAAACATTAATGGCGACCAACAGATTTGTGTGTGAAATTTGCAATAAAGGGTTTCAAAGAGATCAGAATCTTCAATTACATAGAAGAGGCCATAATTTGCCATGGAAATTGAGACAAAGAACAAGTAAAGAGATTAAAAAAAGGGTTTATGTTTGTCCTGAACCTAGTTGTGTTCATCATGATCCTTCAAGAGCTTTGGGTGATTTGACTGGAATTAAGAAACATTTTTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGAAAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATATCAAGATTTGTGGTACCAGAGAGTATAAGTGTGATTGTGGAACAATTTTTTCGAGGAGGGATAGTTTTATCACACACAGAGCATTCTGTGATGCTTTAGCTGAAGAAAGTGCAAGAAATCATCGTCCTCCTAATCCTATAAATGGCAATAACAACAATAATAACAAGATGGAATTGGATTCAAAAGCTTCCATTGCAATCGAATCGCCACCACCAACAACACCACCCCCTCCACCACCGCCAAAAAAGTCGTCACCGCCTAGAACTCGGCCTCTTCAACCTCCCCTTTTGACTCAATCAACTTCTATGGTGTCATCTATTTTGCCTATTCAAAGCTCAGTTCAAGCAGTAGCAGAGAATCCTGGTCCGGTCTCGGACGTTTCGATTCCTCCGGTTTCGATTGCTGTGACGGGTTTGAATGATAACTGTAACAGTAGCACTATTTGCAGTTCTAGCAGTGGTGCTGCTGCCAACACCAGCAGCAGTGTGTTTGCTACCATATTTGCGTCGACCATAACCGCACCAGCAGCACCTAGTTTACCGTCCCTCCCAAATCCGGGTTTCTCAGATTTCATCCAAACCATGGCTCGACCTGAATGCCCGCCACCAGAACTTTCCCTGCCCGTATCATCAGAACCCATTTCACTTTGCCTTGCTACAAATGATGGGTCATCGATTTTCGGACCTGCTGGTCAAGAACGAAGGCAATACGCTCCGCCTCCACAAGCAGCAATGTCAGCCACAGCACTACTTCAGAAGGCTGCTCAAATTGGCAGTGCTAATGGCGGTTCATTACTTCGCGGTCTTGGGCTTGTCTCATCAACTTCACCTGCTGCGCCTTCAGAAAGTCTTCAATGGGGTTCACGGCAAGTTGAGCCTGAGACTCGTCCTGTCCTGTCAGGCCTTGGGCTAGGCTTGCCGTGTGATGAAGGGTCCGGAATGAAGGAACTAATGATTGGAAACTCATCAATGTTTGGACCGAAACAGCCAACCCTCGACTTTCTAGGATTGGGAATGGCGGCAGGGGGGAGTTCAAACAACGGCCTCACAGCATTGATCTCATCGATGGGAAGTGGCCTCGATGTGGCAGCCGCAGCAGCAGCATTCGGAGGACCAGAATTTAGCAGTAAAGACATGGGAAGGAGCTGA
Protein Sequence:
- >AHYPO_010138-RA|Amaranthus_hypochondriacus|C2H2|AHYPO_010138-RA
MPADLDVSSPKTMSNSTGQTGDASISSSADQIEPLKPPPKKKRNQPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIKKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHIKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEESARNHRPPNPINGNNNNNNKMELDSKASIAIESPPPTTPPPPPPPKKSSPPRTRPLQPPLLTQSTSMVSSILPIQSSVQAVAENPGPVSDVSIPPVSIAVTGLNDNCNSSTICSSSSGAAANTSSSVFATIFASTITAPAAPSLPSLPNPGFSDFIQTMARPECPPPELSLPVSSEPISLCLATNDGSSIFGPAGQERRQYAPPPQAAMSATALLQKAAQIGSANGGSLLRGLGLVSSTSPAAPSESLQWGSRQVEPETRPVLSGLGLGLPCDEGSGMKELMIGNSSMFGPKQPTLDFLGLGMAAGGSSNNGLTALISSMGSGLDVAAAAAAFGGPEFSSKDMGRS*