Information report for Achn375731
Gene Details
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Functional Annotation
- Refseq: XP_028116352.1 — LOW QUALITY PROTEIN: lysine-specific demethylase REF6-like
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A2R6QGG9 — A0A2R6QGG9_ACTCH; Lysine-specific demethylase
- STRING: XP_008239384.1 — (Prunus mume)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Fragaria vesca: mrna09903.1-v1.0-hybrid
- Juglans regia: Jr02_01930
- Malus domestica: MDP0000298212
- Manihot esculenta: Manes.14G055900.1.p, MANES_14G055900
- Prunus avium: Pav_sc0000522.1_g100.1.mk
- Prunus mume: XP_008239384.1
- Prunus persica: Prupe.5G159200.1.p, PRUPE_5G159200
- Pyrus bretschneideri: Pbr036965.1
- Rosa chinensis: RchiOBHm_Chr7g0191461
- Sesamum indicum: XP_011072922.1, XP_011072923.1, SIN_1017396
Sequences
CDS Sequence:
- >Achn375731|Actinidia_chinensis|C2H2|Achn375731
ATGGCATCATCATCAGCTCCAGTCGCAGCAGAGCAACTCACCACTGAAGTCTTTCCATGGCTCAAAACCCTACCTCTGGCCCCAGAGTACAACCCAACCCTAGCCGAGTTCGAAGATCCAATAGCATACATCTTCAAGATCGAGACTGAGGCGTCTAAGTACGGAATCTGCAAAATCGTCCCTCCCGTGGCGGCTCCGCCGAAGAAAACCTCAATTGCCAACCTCAATCGGTCTCTATCGGCGAGGTCCACCACCGCAAACCCTAAATCGCCGCCCACATTCACCACCAGGCAGCAGCAAATTGGGTTCTGCCCGAGGAAGCACCGCCCGGTTCAGAAACCCGTTTGGCAGAGCGGCGAGAACTACACTTTCCCCCAATTCGAAGCCAAAGCGAAGAGTTTCGAGAGGAATTACTTGAAGAAGTTCCCCAAAAAGGGCTTATCGGCGCTGGAAGTCGAAACCCTTTATTGGAAAGCTTTTGGGGATAAGCCCTTTTCGGTTGAGTACGCGAATGATATGCCCGGTTCGGCTTTTGCCCCGGTGAGTGCGAGGAAGAAGGATAGGGAAACAGGGGAGGCTGTGACTAATGTGGGTGAGACTGCTTGGAACATGAGAGGGGTGTCTAGGGCTAAAGGGTCCTTGTTGAGGTTCATGAAGGAAGAAATTCCCGGGGTTACGTCACCAATGGTATATTTGGCCATGATGTTTAGCTGGTTTGCTTGGCATGTGGAGGATCATGACCTGCACAGCTTGAATTACATGCATATGGGGGCGGGGAAGACGTGGTATGGAGTGCCGAGGGAGGCGGCAGTTGCGTTAGAGGAGGTGATCAGGGTTCATGGGTATGGAGGAGAGATCAATCCTCTTGTGACTTTTGCTATTCTTGGTGAGAAGACCACTGTCATGTCACCAGAAGTACTTATAAGTGCTGGGATACCATGCTGCAGAGCCTATCACTCGGGTTTTAGTCACGGGTTTAATTGTGGAGAGGCAGCTAATATTGCAACCCCTGGATGGCTGAGGGTTGCGAAAGATGCTGCTATTCGTAGAGCTGCAATCAATTGTCCTCCTATGGTGTCTCACTTCCAGTTGCTTTATGATCTTGCGCTGTCATTATGTTCAAGAATACCTAAGAGCATCGACTCTGAACCACGGAGCTCAAGATTGAAGCATAAGAGAAGGGGTGAAGGTGAAACCTTGATAAAAAAGCTGTTTGTGGAGGATGTAATGAAGAATAATGACCTGCTTCATATTCTTGCGGAAGGATCTTCTATTGTGCTTCTACCCCAAAATTCTTTAGATGATTCCGTTTATTCAAATTCATGTATTGCATCCCGGTTTAAAGGAAATTCTAGTTTTCCCTTGGGACTATGCAATCCTGAAGAAGAATTTAAAGCCTCGGAAAGTTTAGGTTCTGAAAATCTCATGCTAGACAGGAAAGGTGGAATAAAGCAATTGGCAGGTTTCTATGCAGTAAAGGGAGAATTTTCCTCTGCGTGTGATGGTAATAGGTCTTCCTTGTTACATGGTAGTGATGATTCAAGCTCCTTGGCTTCTCAGATCCATAAACCGAACACTGAAAGAGAAAGAACTATTCATGGCCATAAGTTGTCAGATCAGGGATTGTTTTCCTGTGTCACTTGTGGGATTTTGAGCTTTGCTTGTGTTGCCATCGTTCAACCAAAAGACTCTGCTGCACACTACCTCATGTCAGCTGATTGTGGCATCTTTAATGATGGGGATGTTGGTCCTCGAGTAACTAGTGATGCAAATTTCTCCGGACTGGATTCCTGTTCTGGGTGGGTGGGAAAACGCACTCCTGATGGTTTATTTGATGTCCCAATTCAATCTGCTGATCATATTCAAACAGTAGATCAGAGTCCAGAAGTGCTGTCTGACCCTGAAATACAAAAAGGCCCTTCTGCCCTTGGCTTATTGGCTTTGGCTTACAGTAGTTCTGACTCTGAGGACGAAGAGGTCGAAACAGATATTCCCGTGTATGACAGCGAAACCATATCAAGAGATTGTTCACCAGAAAGTAGACTCCAATGTGATGATGATACAAGACTGCCTTCAGTCAAGATTCGTAACGAGGCAACTGGTTGTCACATACATGATTTTGGGGATGATGTTCCTCTCCAAGTTATTGATTCTTGGAGGGATAATCATCCTCCAAGATCTAATTTTAGGTATAGTAATCAAGTTTTTGACTGTTCTGCTGAGTTAGAAACTGATAATATTGTTTCCACGGAATCAGATAGTGTAGGGGGTAGGTTAACACATCAAATGAAACTATCGGCTGCTGCCTCAAATGGTTCTCCTGTTGCCCAGGCTGTAACAAGTAGAAGCAATACTTATGTTCCGTCGGAGAACACCAGTATGTCATTTGCACCAAAGTCTGGTGATGATTCTTATAGGCCGCATGTCTTCTGTCTTCAGCATGCTGCAGAGGTAGAACAGCAACTTCGTCCAATTGGTGGATCGCATATTTTGCTGCTCTGTCATCCAGACTATCCCGAGCTCGAGGCTGAAGCAAAATTAGTGGCAGAAGAACTGGCCATTGATTATTTCTGGAATGATATTGCATTCAGGGAGGCCACTAAAGAAGATGAAGAGAGGATACAAACAGCTCTAGAAAGTGAAGAAGGCACACATGGTAATGGAGACTGGGCTGTTAAGTTAGGCATTAATCTCTTCTACAGCGCCAACCTTGGCCGCTCTCCTCTCTACAGTAAGCAGATGCCATACAACAGTATTATATATAAAGCATTTGGACGCAATTCTCTTACCAACAGCCCAACAAAACCCAAGTTTCATGGGAAAGGATCGGGCAGGCAGAAAAAAATAGTTGTGGCAGGAAAATGGTGTGGGAAGGTGTGGATGTCGAATCAGGTTCATCCTTTGTTAGTAGAAAGAGATGCGGAAGAAGGAGAAGAAGACAACACGAGCTTTCGTGGTTGGGCAAAGCCTGAGGTGAAGCGTGAGAGACTTTCAGAAAGTGCCCGCCCTGCTGAAACAAACTTTGAGATTAGGAAGATTGGAAAGAAGAGGAAGAATACTTGTCAAAAGGAAGGTGGGCCAATCAAGAAATCCAAATGCATGAAAGTAGATGATTCAGTTAAACCTTCAGATGCTTCACCAGAGGGTAATCAGCAATATAGCAGAAATTTTAGAAATCTTAGAAATAAACAACTGAAACTGGAGTCCCCACAGCCTCAGAGAAGCAGTGACCGCAACAAAAGCCGGTTTGACTCTTTCATCGAGGATGCGCTAGAAGGTGGACCTAGTACACGCCTACGGAAAAGAACCTCTAAGCTCCCAGTTGAAGACAAACTAGAATTAAAGAAGCATACAGGTGGTAAGAAAGCAAAGAAATACCCAACCGGGAAGATGAGAGATGAGGAAGAAGGAGAATACCCAAATGACATGGAACCAGTTTTGAAGAGGTATACTGCTAGTAAGAAAGCAAAGAAAGGTCCAACCGGGAAGATGAGAGATGAGGAAGAAGGAGAATACGCAAGTGATGTAGAACCAGTTTGGAAGAGGCATACTGCTAGTAAGAGAACAAAGAAAGGTCCAATCGGGAAAATGCGAGACGAGGAAGAAGGAGAATACCCTAGTGATGAGGAACCAGTTTGGAAGAGGCATACTGCTAGTAAAAGAACAAAGAAAGGTCCAATCGTGAAGATGAGAGACGAGGAAGAAGGAGGATACCCTAGTGATGAGGAACTAGTTTGGAAGAGGCATACTGCAAGTAAGAGAGCAAAGAAAGGTCCAACCGTGAAGATGAGAGCCGAGGAAGAAGGAGAATACCCTAGTGATGAGGAACCAGTATTAAAGAAGCACACTCCTATTAAGAAGACAAAGAAAGGTCCAACTGTGAAGATGAGAGATGAGGAGGAAGTAGGGGAAGAAGGAGAATACCCGTGTGATGTGGAAGGGTGCACGATGAGTTTTGTCTCGAAACAAGAGCTTGTGCTGCATAAAAGAAACATATGTCCAGTCAAGGGGTGTGGAAAGAAGTTCTTCTCTCACAAGTATCTGGTTCAGCACCGGCGTGTTCATATGGATGACCGGCCCCTTAAGTGTCCCTGGAAAGGCTGCAAGATGGCATTCAAGTGGGCCTGGGCTCGTACCGAGCACATAAGAGTCCACACCGGTGCCCGGCCTTACGTTTGCGCGGAGGAGGGCTGCGGCCAGACATTCCGGTTTGTATCGGATTTCAGTCGTCACAAGCGGAAGACTGGTCACTCGACAAAGAAGGGCAGAGGGTAG
Protein Sequence:
- >Achn375731|Actinidia_chinensis|C2H2|Achn375731
MASSSAPVAAEQLTTEVFPWLKTLPLAPEYNPTLAEFEDPIAYIFKIETEASKYGICKIVPPVAAPPKKTSIANLNRSLSARSTTANPKSPPTFTTRQQQIGFCPRKHRPVQKPVWQSGENYTFPQFEAKAKSFERNYLKKFPKKGLSALEVETLYWKAFGDKPFSVEYANDMPGSAFAPVSARKKDRETGEAVTNVGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVALEEVIRVHGYGGEINPLVTFAILGEKTTVMSPEVLISAGIPCCRAYHSGFSHGFNCGEAANIATPGWLRVAKDAAIRRAAINCPPMVSHFQLLYDLALSLCSRIPKSIDSEPRSSRLKHKRRGEGETLIKKLFVEDVMKNNDLLHILAEGSSIVLLPQNSLDDSVYSNSCIASRFKGNSSFPLGLCNPEEEFKASESLGSENLMLDRKGGIKQLAGFYAVKGEFSSACDGNRSSLLHGSDDSSSLASQIHKPNTERERTIHGHKLSDQGLFSCVTCGILSFACVAIVQPKDSAAHYLMSADCGIFNDGDVGPRVTSDANFSGLDSCSGWVGKRTPDGLFDVPIQSADHIQTVDQSPEVLSDPEIQKGPSALGLLALAYSSSDSEDEEVETDIPVYDSETISRDCSPESRLQCDDDTRLPSVKIRNEATGCHIHDFGDDVPLQVIDSWRDNHPPRSNFRYSNQVFDCSAELETDNIVSTESDSVGGRLTHQMKLSAAASNGSPVAQAVTSRSNTYVPSENTSMSFAPKSGDDSYRPHVFCLQHAAEVEQQLRPIGGSHILLLCHPDYPELEAEAKLVAEELAIDYFWNDIAFREATKEDEERIQTALESEEGTHGNGDWAVKLGINLFYSANLGRSPLYSKQMPYNSIIYKAFGRNSLTNSPTKPKFHGKGSGRQKKIVVAGKWCGKVWMSNQVHPLLVERDAEEGEEDNTSFRGWAKPEVKRERLSESARPAETNFEIRKIGKKRKNTCQKEGGPIKKSKCMKVDDSVKPSDASPEGNQQYSRNFRNLRNKQLKLESPQPQRSSDRNKSRFDSFIEDALEGGPSTRLRKRTSKLPVEDKLELKKHTGGKKAKKYPTGKMRDEEEGEYPNDMEPVLKRYTASKKAKKGPTGKMRDEEEGEYASDVEPVWKRHTASKRTKKGPIGKMRDEEEGEYPSDEEPVWKRHTASKRTKKGPIVKMRDEEEGGYPSDEELVWKRHTASKRAKKGPTVKMRAEEEGEYPSDEEPVLKKHTPIKKTKKGPTVKMRDEEEVGEEGEYPCDVEGCTMSFVSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMAFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSTKKGRG*