Information report for Achn364631
Gene Details
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Functional Annotation
- Refseq: XP_028071343.1 — probable lysine-specific demethylase ELF6
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: A0A2R6RTT0 — A0A2R6RTT0_ACTCH; Lysine-specific demethylase (Fragment)
- STRING: POPTR_0010s23160.1 — (Populus trichocarpa)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g000392m
- Juglans regia: WALNUT_00007284-RA, Jr07_34620
- Populus trichocarpa: Potri.010G224700.1, POPTR_010G224700v3, Potri.008G037800.1, POPTR_008G037800v3
- Prunus mume: XP_008233302.1
- Prunus persica: Prupe.2G211400.1.p, PRUPE_2G211400
Sequences
CDS Sequence:
- >Achn364631|Actinidia_chinensis|C2H2|Achn364631
ATGAGGGATGTGGAAATACCTAATTGGCTCAAAGGGTTGCCATTGGCGCCCGAATTTCGCCCAACTGACACCGAATTTGCAGACCCAATTTCTTACATATCAAAAATCGAGAAAGAAGCTAGTATTTTTGGTATATGTAAGGTGATTCCACCATTGCCCAAACCTTCAAAGAAATTTGTTGTTTCTAACTTGAACAAGTCACTTTTAAAGAACCCGGAGTTGGGTCGGGATTTAAACTTGGGAGGAACAGAATCTGGGAACGAGGCAAATGATGGGGAGGCTAGGGCAGTGTTTACCACAAGACAGCAAGAATTGGGTCAGAATGCAAAAACAACTAAGAAAGTAGCTCATCCACAACCACCCACTGTTCGTAAGCTAGTATGGCAAAGTGGGGAAATTTATACATTGGAGCAGTTTGAATCAAAGTCGAAGTCTTTTGCTAAGAACCAATTGGGTTCGGTTAAGGATGTTTCTCCGTTAGCAATAGAAGCACTTTTTTGGAAGGCAGCGTCTGAGAAGCCTATACATATTGAGTATGCGAATGATGTGCCGGGCTCTGGGTTTGGAGAACCTGAGGGTTCATTTCGGTATTTTCATAGACGGAGGAGGAGGAGGACATTCAATCGGAACACTGGTGGAAGTTATAACAGCGGGAAATATCAAGTAAATAGCATGAGCAGTAACTACGAAAACAAAGAGGAATCAGCCAAGAATAGTCCTAATTCTTCTAGAGAGACATCAAAAGTGTCTATTAGTTTACCAACTATATCATCAAATCAAACATCACAATTTTCTAGGCAGAAAAGTTCTACTGCTGCTAAGGAGATGGAAGGTAGTGCTGGCTGGAAACTTTCAAACTGTCATTGGAACTTACAAGTGATTGCGCGTTCACCTGGCTCGCTTACGCGTTTCATGCCGGATGATATTCCAGGTGTTACTTCACCCATGGTCTATATTGGTATGTTATTTAGTTGGTTTGCTTGGCATGTTGAAGATCATGAGCTTCACAGCTTGAATTTCCTACACACTGGCTCTCCAAAGACTTGGTATGCAGTCCCAGGAGACTACGCATTTGCTTTTGAGGAAGTCATTCGTAACCAGGGTTATGGAGGAAATATTGATCGTTTAGCTGCTCTTACACTCTTGGGCGAGAAGACTACTCTTCTGTCACCTGAAGTAGTTGTTGAGTCGGGCATTCCATGTTGCAGGCTAATACAGAACCCTGGTGAATTTGTTGTTACTTTTCCAAGGGCTTATCACGTGGGGTTCAGTCATGGTTTTAATTGTGGGGAAGCGGCTAACTTTGGAACTTCGAAGTGGCTTAATGTAGCTAAGGAAGCTGCAGTGCGTAGAGCTGCTATGAATCATCTTCCCATGCTTTCGCATCAGCAATTGCTATACTTGTTGACTATGTCTTTTGCTTCAAGAGTGCCAAGATCCTTACTGCCAGGGGCACGAAACTCTCGTCTGAGAGATCGCCAGAAGGAAGAAAGAGAGCTGTCAGTTAAGAAGGCTTTTATTGAAGATATTTTGAATGAAAACAATCTATTAACCATTCTACTTGGAAAAAATTCCTCTTATCATGTAGTATTATGGGACCTGGAATCACTGCCATCCCCGAGACAAGACCCTGCACTATGTAGCAATGTCGCTCCTGTTGAAACTGCACCAAGAAAAGACGTTTGTTATGAGAATAAGAATAACCAGGATCTATTTAGCGAGATGAGCTTATATATGGAAACTGTGAACGATTTGTACGCAGATTGTGATGATTTGTCGTGTAATTTTCAAGTCGATTCTGGAGCATTAGCATGTGTCGCTTGCGGGATCCTTGGCTTTCCATTTATGTCTGTGGTACAACCTTCTGAGAAAGCATCAATGGATCTGCAAGATCTAGCATTGTCAAACCCTATGGAGTTTCATTCCCCTGCAGTCCTTGATCACATGGTTGAAGGTTTTGTTTCAGATGGACTGAAGGACAAGATTGAGCGGAATGATAGCAATGCGCTTCGCCTGCCAAATGAAACATCTTCAAGTGCCGAATCAGCCAACTCTATGGTTCTTCCCTCAGAGGATCTGTCTACTTCTCATGATCCTTCTCCACCTCCTAAGGATCTTCCGGTTTCATCAGAAGCCAAATTTGAGAAGGGGTGGAGTGCTTCTAGGGGATTTCTGAGACCGCGGATATTCTGCATGGAGCATGCAATTCAAATTGAGGAGATGTTGCATTCAAAAGGTGGTGCAAATGTTCTCGTAATTTGTCATTCAGACTTCCAAAAAATAAAGGCACATGTTGCAACCGTCGCAGAGGAAATTGATAGTCGTTTTGGTTATAATGAAATTTCGTTAGATGATGCATCCCAGGAAGATTTGAACTTGATTGATCTTGCAATTGATGGTGAAGAACATGATGAATGTGGAGAAGACTGGACCTCAAAACTGAGTATCAACTTACGGCACTGTGTCAAGGTAAGAAAAAATTCCGCATCTAAGCAAGTGCAGCATGCGTTGGCATTGGGTGGGTTATTCTCTGACTCAACTCCTGGTTCCAACACCTCTAATCTCAAGTGGCCATCCAGAAAATCTCGGTCCAAACGGAACATAAACCATTCACTCCATATTAAACCATCTGAGAGCATTGGACTGGATAATCCAGTCCAGGAGAAACCATCTGAGAGCATTCAAATAGAAAAGGTTGAAGTGATGGGAGCAAAGTTAGATGACACCGTGGTTAGAAAAGAAGAAGAATCTCTGGAAGTTCCAATAAAGGCTAATGCTGCTGAGGGAATGCAGAGTGATAGTGAGAACCCTTGTTTGGCTGACGAGAGAGAGCTGGAAAATAATGGCTTCACCAAGGTGCGCCCAAGGTCACCTGCAAGAAATGGAAAAAAAAGAAGACGAAATGTGGAGCTGCAAATAGAAGACCAGTTTGATTACAATAGTTTTATTAGGAGTCCGTGTGAAAGGCTGAGACCAAGGGCTGCGAAAGACTCAAAACAAGGCGGTATTGAAAGCAACGAAACGTTTGAGGAGAAGCCGGCAGCGAAAAAGGCAAGTAAACCTTCTGATGATTTTCCTTCTCGGAAGGGTAAGAAAGAGAACCAGAAGGGGTCCCACAGATGTGACCTAGAAGGGTGCCGAATGAGTTTCAAGACTAGAGCAGATCTACTCTTGCATAAACGAAACCGGTGTCCTCATAAAGGGTGTGGGAAGGAATTCAGCTCTCACAAATACGCAGTGCTTCATCAACGCGTTCATGATGATGATAGACCCCTCAAATGCCCTTGGGAAGGATGCGCGATGTCGTTCAAGTGGGCTTGGGCCCGGACGGAGCATATACGGGTGCACACCGGGGAGCGCCCGTACGAGTGCAAGGTGGAAGGTTGTGGCCTTACTTTCAGGTTCATTTCGGATTATAACCGTCACAGACGGAAAACCAAGCATTACGTGACCTAG
Protein Sequence:
- >Achn364631|Actinidia_chinensis|C2H2|Achn364631
MRDVEIPNWLKGLPLAPEFRPTDTEFADPISYISKIEKEASIFGICKVIPPLPKPSKKFVVSNLNKSLLKNPELGRDLNLGGTESGNEANDGEARAVFTTRQQELGQNAKTTKKVAHPQPPTVRKLVWQSGEIYTLEQFESKSKSFAKNQLGSVKDVSPLAIEALFWKAASEKPIHIEYANDVPGSGFGEPEGSFRYFHRRRRRRTFNRNTGGSYNSGKYQVNSMSSNYENKEESAKNSPNSSRETSKVSISLPTISSNQTSQFSRQKSSTAAKEMEGSAGWKLSNCHWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSPKTWYAVPGDYAFAFEEVIRNQGYGGNIDRLAALTLLGEKTTLLSPEVVVESGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTSKWLNVAKEAAVRRAAMNHLPMLSHQQLLYLLTMSFASRVPRSLLPGARNSRLRDRQKEERELSVKKAFIEDILNENNLLTILLGKNSSYHVVLWDLESLPSPRQDPALCSNVAPVETAPRKDVCYENKNNQDLFSEMSLYMETVNDLYADCDDLSCNFQVDSGALACVACGILGFPFMSVVQPSEKASMDLQDLALSNPMEFHSPAVLDHMVEGFVSDGLKDKIERNDSNALRLPNETSSSAESANSMVLPSEDLSTSHDPSPPPKDLPVSSEAKFEKGWSASRGFLRPRIFCMEHAIQIEEMLHSKGGANVLVICHSDFQKIKAHVATVAEEIDSRFGYNEISLDDASQEDLNLIDLAIDGEEHDECGEDWTSKLSINLRHCVKVRKNSASKQVQHALALGGLFSDSTPGSNTSNLKWPSRKSRSKRNINHSLHIKPSESIGLDNPVQEKPSESIQIEKVEVMGAKLDDTVVRKEEESLEVPIKANAAEGMQSDSENPCLADERELENNGFTKVRPRSPARNGKKRRRNVELQIEDQFDYNSFIRSPCERLRPRAAKDSKQGGIESNETFEEKPAAKKASKPSDDFPSRKGKKENQKGSHRCDLEGCRMSFKTRADLLLHKRNRCPHKGCGKEFSSHKYAVLHQRVHDDDRPLKCPWEGCAMSFKWAWARTEHIRVHTGERPYECKVEGCGLTFRFISDYNRHRRKTKHYVT*