Information report for 485418
Gene Details
Functional Annotation
- Refseq: XP_020881653.1 — protein indeterminate-domain 2
- Swissprot: Q9SCQ6 — IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
- TrEMBL: D7LTH6 — D7LTH6_ARALL; ATIDD2-DOMAIN 2
- STRING: fgenesh2_kg.5__1410__AT3G50700.1 — (Arabidopsis lyrata)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G50700.1, AT3G50700, AT5G66730.1
- Brassica napus: GSBRNA2T00026782001, GSBRNA2T00129185001
- Brassica oleracea: XP_013599512.1
- Brassica rapa: XP_009115733.1, XP_009115732.1
Sequences
CDS Sequence:
- >485418|Arabidopsis_lyrata|C2H2|485418
ATGCCGGTAGATTTAGATAACTCTTCCACAGTTTCCGGTGAAGCAAGTGTTTCAATCTTATCCACCGGAAAATCCACCGGAAAGAAGAAACGTAACCTCCCCGGCATGCCTGATCCAGAGTCAGAAGTTATAGCTTTATCACCAAAAACATTACTAGCAACAAACAGATTCGTATGTGAAATCTGTAACAAAGGGTTTCAAAGAGACCAAAATCTCCAACTTCATCGCCGTGGACACAATTTACCATGGAAGCTTCGTCAGAAATCGAACAAAGAAGTGAAGAAAAAAGTCTATGTTTGTCCTGAAGTTAGCTGTGTTCATCATGACCCTTCACGTGCTTTAGGAGATCTAACTGGAATCAAGAAACACTTTTGTCGGAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGGAGGGATAGTTTTATAACGCATAGAGCTTTTTGTGATGCTTTGGCTGAAGAAAGTGCTAGAAGTCATAATCAGAGTAAGAAACGGAATCCAGACATTTTGACCCGGCAAAAACCGGTTCCTGACCCGATTCCTGCTCCGGTGGATACTGATCAGTCTGCTAAAATCATTTCTTCCTCGACTTTAACAATTAAGCAATCAGAATCCCCCAAAACTCCTCCTGAAATCGTTCAAGAAGCTCCAAAACCGACCGGTGTAAATGTTGTTACACGCAACGGTGTTTTCGAAGGCTTATTCGAATCTTCCTCGGCTTCTCCAAGCATATACACAACATCCTCTTCTTCGCCGAGTCTATTCGCGCCATCTTCGTCCATCGAACCTATCTCTTTGGGTCTCTCAACGAGTCATGGATCATCATTTCTCGGGTCAAACCGGTTCCAACCTCAACCAGCGATGTCAGCAACCGCTTTACTTCAAAAGGCAGCTCAAATGGGAGCATCTTCTTCAGGAGGTTCATTGCTTCGGGGGTTAGGGATAGTTTCATCAACTTCAACTTCTATGGACGCAATAGTCCCTCATGGACTAGGATTAGGACTGCCTTGTGGTGGCGAAAGCAGCTCGGGTTTAAAAGAACTCATGATGGGGAATTCATCCGTGTTTGGTCCGAAACAAACAACATTAGACTTTCTCGGTTTAGGTAGAGCGGTTGGTAACGGAAATGGTCCAAGTAACGGACTATCTGCCCTAGTCGGAGGAAGTAGCGGCATCGATATGGCAAAGACATTTGGATCAGGAGAGTTTTCAGGGAAAGACATTAGTAGAAGAAAATCATAA ATGCAAGCGTCACAGCGACTTAGAAGATCAGCCATGTCTGATACTCTTTATAAATCTGTGCAAAAAACAGAGGCATCCTATCTACCTCAGTTTCAAACATTAGACAAGCAGATGACCAATATTAATCGAACCCAAGGAGGTAATCACTCCATTCAAACTTATTCTGATTGGTATTGCACACTGGAGTCCTCCTCACCTACTGGCAAGTATGCTGTTCAAAACTCAATATCAGCTGTCAGTTTCACTCCAAATGGAAGTCCGATTTCCCATCAAGAATCTCAGTCATGCTTATCAGATGTACATTACTTGCCTGATACTAACTACAACTCCCCAGTAAGTGGATCATGCATTACAGATGATGTGAATGATTTCAGGCACAAGCTAAAAGAATTGGAAACTGTAATGCTGGGACCTAATTCAGACGTTCTGGATAGTTGTGATAATTCCCTGCCGAGCTGTATGACCTCCCCAGAAATTGGCTGTTGGAGACAAATGTTGGAGGCGATACCTAGAGGGGATTTAAAACATGTGCTCATTGCGTGTGCAAAAGCAGAATCAGATGGTGATTTGCTTACAGCTCAGTGGTTGATATCAGAGTTGCGTCAAATGGTGTCAGTGTCAGGGGAACCAATTCAGCGACTCGGAGCATACATCCTTGAAGGCCTTGTAGCAAGGTTAGCGGCATCAGGAAGTTCCATATACAAATCCCAAAGATGCAAAGAACCAGCTAGTTTTGAACTGCTTTCATATATGCATATTCTTCATGAAGTTTGCCCCTACTTCAAATTTGGATACATGTCGGCAAATGGTGCCATTGCAGAAGCAATGAAGGATGAACAAAGAGTTCATATCATTGATTTCCAAATTTCTCAAGGGAGTCAGTGGGTTACTCTAATCCAAGCTTTTGCAGCTCGGCCTGGAGGTCCACCTCATATCCGCATAACGGGTATTGATGATTCCAAATCAGCCTATGCGCGTGGAGGAGGGCTTAATATTATTGGCAAGAGGCTTTCTAAGCTTGCTGAGTCCTTCAAGGTGCCTTTTGAGTTTCATGCTGCCGCCATATCTACTTCTGATGTTCAGCTAGAAAACCTTGGAATTCGACCTGGTGAAGCACTGGCAGTAAATTTTGCATTTGTGTTGCATCACATGCCAGACGAAAGTGTGAGCACAGAAAATCACAGGGATCGACTGATACGGCTGGTTAAGAGCTTGAATCCCAAGGTGGTTACCCTTGTTGAGCAAGAATCTAATACAAATACTGCAGCTTTCTTTCCTCGTTTCCTTGAAATGTTAGATTACTATACTGCCATGTTTGAATCAATTGATGCGACTCTCTCAAGGGCGCATAAGGAGCGCATCAATGTTGAGCAGCATTGTTTGGCAAAAGATATTGTTAACATCATCGCCTGCGAGGGAATTGAGAGGGTGGAGCGGCATGAGCTTCTTGGTAAGTGGAAGTCACGGTTTAGAATGGCTGGTTTCAGCCCATATCCTTTGAGTTCATTGGTGAATTCTACTATCAAAGCATTGGTAGAAAACTACTGTGACAAATATAGGCTTGAAGAAAGAGATGGAGCTTTGTACCTCGGTTGGATGAACAGAGATTTGGTTGCTTCTTGTGCATGGAAGTAG
Protein Sequence:
- >485418|Arabidopsis_lyrata|C2H2|485418
MPVDLDNSSTVSGEASVSILSTGKSTGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARSHNQSKKRNPDILTRQKPVPDPIPAPVDTDQSAKIISSSTLTIKQSESPKTPPEIVQEAPKPTGVNVVTRNGVFEGLFESSSASPSIYTTSSSSPSLFAPSSSIEPISLGLSTSHGSSFLGSNRFQPQPAMSATALLQKAAQMGASSSGGSLLRGLGIVSSTSTSMDAIVPHGLGLGLPCGGESSSGLKELMMGNSSVFGPKQTTLDFLGLGRAVGNGNGPSNGLSALVGGSSGIDMAKTFGSGEFSGKDISRRKS*