Information report for 462886376
Gene Details
Functional Annotation
- Refseq: XP_025815151.1 — lysine-specific demethylase JMJ705-like
- Swissprot: Q5N712 — JM705_ORYSJ; Lysine-specific demethylase JMJ705
- TrEMBL: A0A0A9DU02 — A0A0A9DU02_ARUDO; Uncharacterized protein
- STRING: Pavir.J31927.1.p — (Panicum virgatum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Panicum virgatum: Pavir.9NG271400.2.p, Pavir.9NG271400.1.p, Pavir.5KG706100.1.p
- Setaria italica: SETIT_000062mg, Seita.5G420700.2.p, Seita.5G420700.1.p
- Setaria viridis: SEVIR_5G426200v2, Sevir.5G426200.2.p, Sevir.5G426200.1.p
- Triticum aestivum: TraesCS3D02G407400, Traes_3DL_C1684BF20.2
Sequences
CDS Sequence:
- >462886376|Eragrostis_tef|C2H2|462886376
ATGCCGGGCTCGGGGTTCGTCCCCTGCGCCGGCCGCCCGAGGCAGCAATCCGCGGCCGCCGCGCAGGTGAACGTGGGCGACACGGAGTGGAACATGCCCGGCGTCGCCCGGAGCCCCGGCTCGCTGCTGCGGTTCTTGCGGGAGGAGGTCCCCGGCGTCACCACACCAATGCTGTACGTCGCCATGATGTTCAGTTGGTTCGCGTGGCACGTTGAGGATCACGACCTGCGTGGTACGGGGTGCCGCGAGACGCTGCGCTCGCGTTCGAGGAGGTGGTGCGCGTCCATGGAAACCTTCGCAATGCTGGGGAACAAGACGACGGTGATGTCCCCTGAAGTGCTTGTGGAATCAGGGATCCCCTGCTGCAGATTGGTGCAGAATGCAGGGGAGTTCGTGGTCACTTTCCCCGGAGCATATCACAGCGGTTTCAGTCATGGATTCAACTGCGCAGAAGCATCAAATATAGCTACTCCTGAATGGTTGAGAGTTGCGAAAGAGGCAGCAGTTCGCAGAGCCTCAATCAATCGTCCTCCCATGGTGTCTCACTATCAATTGCTTTATGAACTTGCAATGTCAATGTGCGTGAGCTCTACAACCACGATGAATGTCATACCGAATGTGAAACCTGATAAGGATTCATCAAGAATGCATGTATTTTGCCTTGAACATGCTGCTGAGGTTGAGAAGCAACTTCAAACTATTGGTGGTTCCCATATTGTTCTTCTGTGTCGTCCAGAATATCCCAAAATAGAAGCTGAAGCAAGATTGCTGGCTAAAGAAATGGAGGCTGAATATGATTGGAAGGACATTCATTTCAGAGAGGCCAGTATGGAGGATAGGGAGCAGATACAGGAAGTTGTGCGGGATGAGGAAACAATACCAACAAGTAGTGATTGGGCTGTAAAACTGGGCATTAACCTTTACTATAGTGCAAATCTTGCTAAGTCTCCTTTATACAACAAGCAATTGCCGTACAACCGAGTTATCTACAAGGCATTTGGCTGCAATTCTCCCAATAACTCACCAGTAAAGCTGAAAACTTATGCCAGAAGTCAAGGCAGACAAAAGAGAGTTGTCTTGGCTGGCCATTGGTGCGGGAAAGTATGGATGTCAAACCAGGTCCATCCCTACTTGGCTGATAGATCTGAAAATCAGGAGCCAGAAGAAACATATGAGATCTGTTCTTCTCATCTTGATAAGAAAACAAAAGGTGAACCAGTTGAAAATTCAACTAGAGAGGCAGCTTCCACAGGAAAGAGTAACAACAGAGCAGTTGAAGAAAAAACTAGCAACATGGAACAAGAACCTGTGGAGAAAACAAACACCAAGAAGCCAAAACGTACTGAGGAACACAATTCCAAAGTATCAGAAAGTGATATAGTCTATACAAGAAAGAGTAGCAGTAGAACAGTTGTAGAACAAGCAAGTGATATGGACAAAGAACCTGTGAACGAAGCAAACACAGAGAAGCCAAAATACACTGAAGAGGACAATTCCAGAGGATTAAAAGGTGCTGCAGAAGCCTCGTGTCTCTTACCGACTGGAGTGGTACTCCGTAGTAGCACAAGGATTGCAAATAGGAAAAACAAGCTGAAATCAAAGATGGAAGAAGAAGATAATGATCCAGCTAGTCACCTAAAGTCGGTTGTCAAAGAGGGCAAGGATGGTCCTGCTAGTAATTTGAGAGCAAGATCGCCAAGTCAGAAGGCTGAAGTAGACACGAAGAAACAATTGAAGGAAACCAGAGGACAAAAGCGGAAGACTCCAAGTGCAACTGATGAAGAAGGGCCATCTGACGCCAAGGGATGTTCTGCGAATTCTGACAGAAAACAGCAGCTTTCTGTATGTAAGCAGACGAATAAAGTAGAAGCAAAGCAAGAAACGAAGAGAGGAAAGAGGAGAGCTCCAAGTGCTCCAGAGAAGGAAGAAGAGTACAAATGCAATATTGATGGCTGTTCTATGAGTTTTGACACAAAACAGGAGCTGTCTTTGCATAAGCGGGATATCTGTCCAATGAAGGGCTGCCAGAAGAAGTTCTTCTCGCACAAGTATCTGCTGCAGCATCGTAAGGAAACCAGAGGACAAAAGCGGAAGACTCCAAGTGCAACTGATGAAGAAGAGCCGCCATCTGACGCCAAGGGATGTTCTGCGAATTCTGACAGAAAACAGCAGCTTTCTGTATGTAAGCAGACGAATAAAGTAGAAGCAAAGCAAGAAACGAAGAGAGGAAAGAGGAGAGCTCCAAGTGCTCCAGAGAAGGAAGAAGAGTACAAATGCAATATTGATGGCTGTTCTATGAGTTTTGACACAAAACAGGAGCTGTCTTTGCATAAGCGGGATATCTGTCCAATGAAGGGCTGCCAGAAGAAGTTCTTCTCGCACAAGTATCTGCTGCAGCATCGTAAGGTCCATGCTGATGACCGCCCACTGAAATGCTCGTGGAAGGGCTGCAATATGGCATTCAAATGGCAATGGGCAAGGACAGAGCATATGAGAGTCCATACAGGCGACAGGCCCTATGTTTGCCATGAGCCGGGGTGTCAACAGACATTCAGGTTTGTCTCAGATTTCAGCCGTCACAAGCGCAGGACGGGTCATTTAGACAAGTTGAAAACAAAGAGTTGA
Protein Sequence:
- >462886376|Eragrostis_tef|C2H2|462886376
MPGSGFVPCAGRPRQQSAAAAQVNVGDTEWNMPGVARSPGSLLRFLREEVPGVTTPMLYVAMMFSWFAWHVEDHDLRGTGCRETLRSRSRRWCASMETFAMLGNKTTVMSPEVLVESGIPCCRLVQNAGEFVVTFPGAYHSGFSHGFNCAEASNIATPEWLRVAKEAAVRRASINRPPMVSHYQLLYELAMSMCVSSTTTMNVIPNVKPDKDSSRMHVFCLEHAAEVEKQLQTIGGSHIVLLCRPEYPKIEAEARLLAKEMEAEYDWKDIHFREASMEDREQIQEVVRDEETIPTSSDWAVKLGINLYYSANLAKSPLYNKQLPYNRVIYKAFGCNSPNNSPVKLKTYARSQGRQKRVVLAGHWCGKVWMSNQVHPYLADRSENQEPEETYEICSSHLDKKTKGEPVENSTREAASTGKSNNRAVEEKTSNMEQEPVEKTNTKKPKRTEEHNSKVSESDIVYTRKSSSRTVVEQASDMDKEPVNEANTEKPKYTEEDNSRGLKGAAEASCLLPTGVVLRSSTRIANRKNKLKSKMEEEDNDPASHLKSVVKEGKDGPASNLRARSPSQKAEVDTKKQLKETRGQKRKTPSATDEEGPSDAKGCSANSDRKQQLSVCKQTNKVEAKQETKRGKRRAPSAPEKEEEYKCNIDGCSMSFDTKQELSLHKRDICPMKGCQKKFFSHKYLLQHRKETRGQKRKTPSATDEEEPPSDAKGCSANSDRKQQLSVCKQTNKVEAKQETKRGKRRAPSAPEKEEEYKCNIDGCSMSFDTKQELSLHKRDICPMKGCQKKFFSHKYLLQHRKVHADDRPLKCSWKGCNMAFKWQWARTEHMRVHTGDRPYVCHEPGCQQTFRFVSDFSRHKRRTGHLDKLKTKS