Information report for 462846634
Gene Details
Functional Annotation
- Refseq: XP_025795605.1 — transcription factor IIIA-like isoform X1
- Swissprot: Q84MZ4 — TF3A_ARATH; Transcription factor IIIA
- TrEMBL: A0A2T7F0W9 — A0A2T7F0W9_9POAL; Uncharacterized protein
- TrEMBL: A0A2T8KTL1 — A0A2T8KTL1_9POAL; Uncharacterized protein
- STRING: Si020193m — (Setaria italica)
- GO:0005730 — Cellular Component — nucleolus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0008097 — Molecular Function — 5S rRNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0080084 — Molecular Function — 5S rDNA binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Panicum virgatum: Pavir.1NG010700.1.p, Pavir.1KG020700.1.p
- Setaria italica: Seita.1G117800.1.p
- Setaria viridis: Sevir.1G116900.1.p
- Zea mays: GRMZM2G380515_P02, GRMZM2G380515_P04
Sequences
CDS Sequence:
- >462846634|Eragrostis_tef|C2H2|462846634
ATGTGTTCTGGTGATGAGATCGATGGAGGTGGAAGGGTTGGACAAGCGACTTGCAAGGATATAAGGCGCTACAAATGTGAATTTTGTGCTATTGTTAGGTCAAAAAAATGTCTAATTCAAGCTCACATGGTTGAAAATCACAAGGATGAACTGGACCAATCAGAAATATACAACTCAAATGGTGAAAAGATCATTTATGAGGTTGAACATAAGTGCTTAGAATGTGGAGCTTGTTTCCAGAAGCCAGCGCATCTGAAGCAGCACATGCAAAGTCACTCTCAGGAGGTTGGGATGACCTCCTGTGAAGCTTCAACAAGATTGCCTCGTTCACGCCAACCCATTGAGCTTCCTTATGGCTGCTTTGAGAAGATGCATGAGGATCCAATATCAAAATGTCATCTCAGAAAGCTAGGACCATTCTTCATTAGTTCTCAGCTCGCTATGAGACTTTTCAATTGCCCACTCGAAGACTGCCCCTTCAGCTATAAAAGAAAAGATCACTTGAACCGACACATGCTTACGCATCAGGGCAAGTTTAGCTGCGCTGTGGACGGTTGTGATAGGAGGTTCAGTATCAAAGCAAATATGCAACGGCACATTAAGGAAATCCATGAGGATGAAAATACTGCTAAGAGCGACCAGCAATTCGTTTGCAAGGAGGGATGTAACAAGTCCTTCAAGTATCTTTCGAGGCTAAAGAAACATGAGGAGTCGCATGTTAAACTGAACTATGTGGAAGTAGTATGCTGTGAACCAGGCTGCATGAAGATGTTCACAAATGTTGAATGCTTAAGGGCTCATAACCAATCTTGCCATCAGTACATTCAGTGTGAGATATGTGGGGAAAAGCACCTGAAGAAGAACATTAAGCGGCACCTACAAGCACATGAAGAGGTCCCATCTAGTGAAAGGATGAAATGCACCTTTGAGGGCTGTGAACACACCTTTTCCAACAAATCAAATCTGACAAAACATATGAAGGCATGCCATGACAACGTGAAGCCTTTCTCTTGCCGATTTGCTGGGTGTGACAAAGCCTTCACCTACAAGCACGTCAGGGACAACCATGAGCAATCTAGCGCTCATGGAGACTTCGAGGAGATTGACGCACAATTGCAGTCACGTCCCAGAGGTGGAAGAAAGAGGAAATCCTTGACGGTTGAAACACTAACACGCAAGAGAGTGACCATTCCCGGCCAGGCTTCAGCGACGGATGATGGTGTGGAGTATCTACGTTGGTTGCTGTCCGGTGGGGATGTTAAACTGAACTATGTGGAAGTAGTATGCTGTGAACCAGGCTGCATGAAGATGTTCACAAATGTTGAATGCTTAAGGGCTCATAACCAATCTTGCCATCAGTACATTCAGTGTGAGATATGTGGGGAAAAGCACCTGAAGAAGAACATTAAGCGGCACCTACAAGCACATGAAGAGGTCCCATCTAGTGAAAGGATGAAATGCACCTTTGAGGGCTGTGAACACACCTTTTCCAACAAATCAAATCTGACAAAACATATGAAGGCATGCCATGACAACGTGAAGCCTTTCTCTTGCCGATTTGCTGGGTGTGACAAAGCCTTCACCTACAAGCACGTCAGGGACAACCATGAGCAATCTAGCGCTCATGGAGACTTTGAGGAGATTGATGCACAATTGCAATCACGTCCCAGAGGTGGAAGAAAGAGGAAAGCCTTGACAGTTGAAACTCTAACACGCAAGAGGGTGACCATCCCCGGCGAGGCTTCAGCAACGGATGATGGTGTGGGGTATCTACGTTGGTTGCTGTCCGGTGGGGATGGGTCAAGCCAAAATCTGTAG
Protein Sequence:
- >462846634|Eragrostis_tef|C2H2|462846634
MCSGDEIDGGGRVGQATCKDIRRYKCEFCAIVRSKKCLIQAHMVENHKDELDQSEIYNSNGEKIIYEVEHKCLECGACFQKPAHLKQHMQSHSQEVGMTSCEASTRLPRSRQPIELPYGCFEKMHEDPISKCHLRKLGPFFISSQLAMRLFNCPLEDCPFSYKRKDHLNRHMLTHQGKFSCAVDGCDRRFSIKANMQRHIKEIHEDENTAKSDQQFVCKEGCNKSFKYLSRLKKHEESHVKLNYVEVVCCEPGCMKMFTNVECLRAHNQSCHQYIQCEICGEKHLKKNIKRHLQAHEEVPSSERMKCTFEGCEHTFSNKSNLTKHMKACHDNVKPFSCRFAGCDKAFTYKHVRDNHEQSSAHGDFEEIDAQLQSRPRGGRKRKSLTVETLTRKRVTIPGQASATDDGVEYLRWLLSGGDVKLNYVEVVCCEPGCMKMFTNVECLRAHNQSCHQYIQCEICGEKHLKKNIKRHLQAHEEVPSSERMKCTFEGCEHTFSNKSNLTKHMKACHDNVKPFSCRFAGCDKAFTYKHVRDNHEQSSAHGDFEEIDAQLQSRPRGGRKRKALTVETLTRKRVTIPGEASATDDGVGYLRWLLSGGDGSSQNL