Information report for 404286
Gene Details
Functional Annotation
- Refseq: XP_002962475.1 — probable lysine-specific demethylase ELF6
- TrEMBL: D8QUV3 — D8QUV3_SELML; Uncharacterized protein
- STRING: EFJ35938 — (Selaginella moellendorffii)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT5G04240.1
- Brassica napus: GSBRNA2T00136387001, BnaA10G0285500ZS, BnaC09G0604100ZS, GSBRNA2T00072972001
- Brassica oleracea: XP_013611724.1, Bo9g181310
- Brassica rapa: XP_009122624.1, XP_009122623.1, Bra009474
- Cucumis melo: MELO3C019813, MELO3C019813P1
- Raphanus raphanistrum: RrC1477_p6
- Saccharum spontaneum: Sspon.01G0002960-3C
Sequences
CDS Sequence:
- >404286|Selaginella_moellendorffii|C2H2|404286
ATGGTGGAGGTGGAAGTAGCGCCGTGGATCAAGGGGCTTCCTGTAGCTCCAGAGTATCGCCCCAGCGAGGCCGATTTTGTGGATCCCATCTCCTTCGTGCTGAGGATCGAGGAGGAAGCTGGGCAGTTTGGGATTTGCAAGATCGTCCCGCCCACCGTGAAGCCGCGCCGGAAGTCGCTCCTTCCAAACCTCTACAGGTCCATAGCCGCGGCCGGGAAATCGTCGGGGAAGAAGGCATCGATTGGGCTCGACGCGAATTCTCTAGCGGGATCCAAGTTTACCACTCGCAAGCAAGAGCTGGGCGATCAGACTCACGCTCAAACTCGGCACAGCAAGGGGGCAAGCTATACCTTGGACCAGTTTGAGATCAAGGCCAAGGCTTTTACTCGAGCACAGGTTGGAACTTCCAGGGATGTTGTTCCGGTTGTCTTGGAGGCTCTGTTCTGGAAGACAATCGAGGAGGATAAGCCAGTGACTGTGGAATATGCGGACTATATTCCAGGCTCCGCGTTCCCGGAGAGTGATAGCGAGCAGGGCGATGGCAAGAAAAGGAAGAAGAGTGCTGTGGACAGGGAAGGGTGGAAGCTCGTCAATAGTCCCTGGAACATGAGATACTTGGCGAAGTTACAGGGGTCTTTGCTGAGATTCATGCCTGGCGAGGTCCAAGGCGTGACGTCTCCGCTGTTATACATAGCCATGCTCTTCAGCCACTGGTCATGGAGAACCGAGAGCCACGACCTCCACTTTGTGGACTATTTGCATCTGGGTGCTCCGAAGACGTGGTATGTGGTGCCACCCGGCGCGGCTCCTGCTTTCGAGGACGTTTTAAGAAACCAAGACGATAACTCCGTCGTCAGCCCGGAAGTGCTCGTGATCAATGGCGTTCCCTGCTGCAGACTTGTGCAGAACCCTGGAGAGTACGTCATCGTTTTTCCGAGGGCGTATAATTTCAGCTTCAGCCATAGTTTCAATTGCGGTGAAACCAGCAGTTTAGCAAGTCCAGGCTGGTTGAAAGCTGCCAAGCAAGCAGCTGCTCGCAAAGAATTATTATGCCGTCCTCCGATGGTTTGCCATGAGAAATTATTATACCAAACAGCACTAGCGTTTGCGAAAAGTTCGAACGCACAGGATGTCCGAAGTTCGAGACTAAAGCACAAAATGAAAGTCGGCGCAGAGGAAGCAGTAAGAACAGAGTTCGTCAACGACATGGCCAAGAATCAACAGGTGCTCGACAAACTCGTTAGCATGACACAGGCAAGGCGGGTTATTTTCAAGGGCGATGACGGGAAGGAGAGTCTCTCCAACCTGGTGAACTTAGGCACAATTGACTCTATCTCGCTGCTATCATTTGTGTGCGAAACCATGGAAGGCGCCGACGAGAAGGTTGGCGATGATGAGACCCTCGGTAAAAACAGTCCTCCTCGAATTGATTGGGGGAATGTATCCTGTTCCATTTGCGGTATTCTGTGCTACTCCTGCATAGTGATTGTTCAGCCGACGTCCAAAGCCAGTGAGAGTATTCGGGAAGGAAGATTGACAGTCACAGATGAGAACCACGTACAGGAAGATGAGAATGGATCGTCTCGGAAGGTTCTACCTCCGAATGGGAGCAGGAAAGCAGGCCGGGATAACTTACAGCGTCCATATATCATGTGCTCGGAGCACGCGTTACAGGTATCCTTGCTGCTCCAAGGTTGCGGGGGAAGCCTCGTTCTGGTTGTTTATCATCCAGAGTATGAGATGTTCGATAAGAATGCGAAGGACTTTGCAATGGATATGAGCATGCGGTGTCGCTTCAGAGATACCACGTATGACGAGGAGAACCAGCAGGATTTGCAACTCATCAGCGCTGCAATCGAAGCGGCTGAGAGACCTGACAACGGTTGGATTGATCATGTTCAGGCAAGGCTTCCAGCGACAGCATCCTTTTTAGAAAACAGCAGGGCAGAAACAGACGAAGATGACACTGAATTGGTGGTAGAGAAGACATCGAAGGAGAAGAAAGTAGTCGGGCGTTGGTGTGGTCGGGTCTGGAGACATGATCAGACGCACGCCATTTTAGGAGGGTGCCGAACAGCTTCCAAAGTAGAAGATAACCAGGATGAGTTAGCGGATAGTAAGACCAGGAAAAGTAAAGGCGGCCACGACGAGGACATACTTAAGAGTGAGGACTATGCAAGCCTCAGGAAAAACTGTAGGAAAAGGAAACGGACACAAATGGTTGCAGTATGGCGGGTTGAATCCGAGCCTCAGCCTTGCTCCACGCAAATAAGTGAAAGTCTTCCTTCTGAACTGGAGGCCAACGATGTCAAGACCGAGAAGGTTGCTTCTCTTGACGAGGATGTCAAAGTGTCAGAGCCAGAGCTTCGAACGGAGAATCGCTCGTCTGAAGAAGGCCGGCCTCTACCTCCTCTAGTTTGCAAGGAAGAAAAGGAAGAAAACGGGAAGTTGGAGCTGCCGTGTCCTGAGGAAACGACCAAGCCGCTAGTTATCGTGGACTGCAAGGAGGAGCCTGAGATTCATCGTGAAGCTGTGGTTTTGGACGAAGAGGCCCCTCAGGAGAATGTTGCGGCATATAAGGAAGTGTTACCAGCTCCTCCGGAGGAACCTGAGCAGCAATCCAAGGAGAAGGAGCCTGACCCGGTAGCTGCTGAAAATGAGCCTGTTTCGGTGGTGATCACTGAAGACGATGGTCAGCATGGTGCAGGATCGACGCTCTGTTTCTCAAACAGCGTATGGCATGACGTGCCTATCTCGTTTTCTCCAACTTTTCATTCATCGTACATGGATGAGAAGCCAAAGGCATGGCCGACGGCTCACAGGACGCCATTGAAGATAGGAATCCCAAAGAGGAAAAGGACTCAAATAGCTTCATCTTTGGAGGCTAGCGACGAAGAGAAACAGCTAACAGACGAGGACCTGGAAGAAGATTATGATGAAGAAGAAGAAGCAGAGGAAGACGAGGAGGAGCAGAATTATAGCAATGTGTCAGCTTCGTCTGTTGAGGATGACGAACGCGCTGTGGATGAAGCCGCAGAGTATGGTCTGGAATCCAGAGCTAAGAGGACCAAGCGCAAGAGCTGGAAAGCTCAAGCAGCAGAAGAACAAGAGAAAGCTCCTAGACGAGGAGGAGCGAAGAAGGCCTCGACGTCGACAAAAAGGCCTGGCAGCGAGGCGACGAAGCGCAAGCTTGCTCCCGGCATGGTGCACTCTCATGGACTACACACTTGCGACTTCGATGGATGCACGATGAGCTTCCGAACAGCGAGCGAGCTAGCTCTGCACAAGCGCAACATCTGCACCATCAAGGAGTGCTCCAAGCGCCTCTGCTCGCACAGCTACCTGATGCAGCACTACCGCGTCCATGCCGACGACCGGCCTCTCAAGTGTCCCTGGAAAGGCTGCAAGAAGACGTTCAAATGGTCCTGGGCCCGAACGGAGCACATCCGAGTCCACACCGGCGAGAGGCCCTACGCCTGCACCGAGTGCGGCAAGAGCTACAGGTTTGTCTCGGATTTCAGTCGCCACAAGCGTACAACGGGTCACAGTACGTGA
Protein Sequence:
- >404286|Selaginella_moellendorffii|C2H2|404286
MVEVEVAPWIKGLPVAPEYRPSEADFVDPISFVLRIEEEAGQFGICKIVPPTVKPRRKSLLPNLYRSIAAAGKSSGKKASIGLDANSLAGSKFTTRKQELGDQTHAQTRHSKGASYTLDQFEIKAKAFTRAQVGTSRDVVPVVLEALFWKTIEEDKPVTVEYADYIPGSAFPESDSEQGDGKKRKKSAVDREGWKLVNSPWNMRYLAKLQGSLLRFMPGEVQGVTSPLLYIAMLFSHWSWRTESHDLHFVDYLHLGAPKTWYVVPPGAAPAFEDVLRNQDDNSVVSPEVLVINGVPCCRLVQNPGEYVIVFPRAYNFSFSHSFNCGETSSLASPGWLKAAKQAAARKELLCRPPMVCHEKLLYQTALAFAKSSNAQDVRSSRLKHKMKVGAEEAVRTEFVNDMAKNQQVLDKLVSMTQARRVIFKGDDGKESLSNLVNLGTIDSISLLSFVCETMEGADEKVGDDETLGKNSPPRIDWGNVSCSICGILCYSCIVIVQPTSKASESIREGRLTVTDENHVQEDENGSSRKVLPPNGSRKAGRDNLQRPYIMCSEHALQVSLLLQGCGGSLVLVVYHPEYEMFDKNAKDFAMDMSMRCRFRDTTYDEENQQDLQLISAAIEAAERPDNGWIDHVQARLPATASFLENSRAETDEDDTELVVEKTSKEKKVVGRWCGRVWRHDQTHAILGGCRTASKVEDNQDELADSKTRKSKGGHDEDILKSEDYASLRKNCRKRKRTQMVAVWRVESEPQPCSTQISESLPSELEANDVKTEKVASLDEDVKVSEPELRTENRSSEEGRPLPPLVCKEEKEENGKLELPCPEETTKPLVIVDCKEEPEIHREAVVLDEEAPQENVAAYKEVLPAPPEEPEQQSKEKEPDPVAAENEPVSVVITEDDGQHGAGSTLCFSNSVWHDVPISFSPTFHSSYMDEKPKAWPTAHRTPLKIGIPKRKRTQIASSLEASDEEKQLTDEDLEEDYDEEEEAEEDEEEQNYSNVSASSVEDDERAVDEAAEYGLESRAKRTKRKSWKAQAAEEQEKAPRRGGAKKASTSTKRPGSEATKRKLAPGMVHSHGLHTCDFDGCTMSFRTASELALHKRNICTIKECSKRLCSHSYLMQHYRVHADDRPLKCPWKGCKKTFKWSWARTEHIRVHTGERPYACTECGKSYRFVSDFSRHKRTTGHST*