Information report for XP_010103855.1
Gene Details
|
|
Functional Annotation
- Refseq: XP_024026165.1 — bZIP transcription factor 12
- TrEMBL: W9RLX2 — W9RLX2_9ROSA; 60S ribosomal protein L10
- STRING: XP_010103855.1 — (Morus notabilis)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006412 — Biological Process — translation
- GO:0032502 — Biological Process — developmental process
- GO:0071493 — Biological Process — cellular response to UV-B
- GO:0005730 — Cellular Component — nucleolus
- GO:0005774 — Cellular Component — vacuolar membrane
- GO:0009507 — Cellular Component — chloroplast
- GO:0022625 — Cellular Component — cytosolic large ribosomal subunit
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0003735 — Molecular Function — structural constituent of ribosome
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla000383
- Cucumis melo: MELO3C014384P1
- Cucumis sativus: Cucsa.184670.2, Cucsa.184670.4
- Fragaria vesca: mrna11837.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_33888_BGI-A2_v1.0, Cotton_A_00580_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A01G1472, Gh_A03G1863, Gh_D02G2302
- Juglans regia: WALNUT_00011287-RA
- Malus domestica: MDP0000706379
- Musa acuminata: GSMUA_Achr3P22470_001
- Prunus mume: XP_008218853.1
- Prunus persica: Prupe.1G562000.1.p
- Vitis vinifera: GSVIVT01029696001
- Ziziphus jujuba: XP_015886309.1
Sequences
CDS Sequence:
- >XP_010103855.1|Morus_notabilis|bZIP|XP_010103855.1
ATGGCGTCGTCCAACGTGGTGATAGCGTCCGCTTCGCCGACGACCAATTCGGAACTGCCTCGCCAGTCCTCTATATGTTCTCTCTCCACCTTCATCGCCGATCTCCATCACAACCAGACTCACGACGACGACGACGAAGAAGAAGAAGCTTCCAGAAACCTCGCCTCCGTCGCCGCCATGGACGACATCCTCAAGAGCATTTACTCCGAATCTCCGCAACCGCAGCAGTTGCAGGATCATCCGTCGGAGTCTCCGTTCCCGGCCGACGGCGTCGACGAGGTCTGGAAGAGGATCGTCGCTGGCGGGACCGATCGGAGGGCGGAAGTCGTTGGCGGCGGCGGCGACGGCGGCGCGATGACGCTGGAGGATTTCTTGTCGAAGAATGGCGCCGTGAGGGAAGAGGACGTTATGGTTGCGGTGGGAGGGTACGGCCAGTTCCAGGCTGCTCCCATGGTCGTTTACGGCAATGGAAGTGGAGCGGCGACGCCGGCGGCGAGAGTGAGGAGGAGAGTTGTCGAGGAGCCGCTCGATAAGGCGACGCAGCAGAAACAGAGGAGAATGATTAAGAACAGAGAGTCTGCGGCCAGGTCCAGAGAGCGCAAGCAGCCTAAAAGTGCTTATTTGGTGGGAGGGGAAAGTGGGATGAGGGGATTGGTGGAAGGATTTTTGGACCCTTGGTTCTTTGTAGGAGAGAAACGAAAGAATGGAATGGGTTGGGCTTACACAGTTGAGCTCGAGTCTCTAGTGACACAACTGGAAGAGGAGAATACACGATTATTGAGAGAACAGGCTGAGTGGTACGAGGAGAGGCGTAAACAGCTCATGGAAAACCTTGTTCCATTTCTGGAAAAGAAGGAAAACAAGAAAATCAAGGAAAAAGAAATCGTGGAGAACTTTCATCTACAAGTGGAAAAGAGAAGAACATTCACACTAATTCCAGTTGTGGAAAAGAATGAAGAGATGGAAAAAGAAATCGCGGAAAAGCTTCTTCTACAAGACGGATGGAGCATTGCTGACTTTAGGGTCTTCGTTCGTAGCCGCAGACAGAGTACAGATTTCGCCATGGGGAGAAGACCCGCCAGATGTTATCGGCAGATTAAGAACAAGCCGTATCCGAAATCACGGTTTTGCCGTGGTGTGCCTGACTCCAAGATCAGGATTTATGATGTGGGAATGAAGAAGAAGGGAGTCGATGAATTCCCCTTCTGTGTCCACTTGGTTTCCTGGGAGAAGGAAAATGTTTCAAGTGAGGCTCTTGAGGCTGCTCGTATTGCCTGCAACAAATATATGGCCAAGTATGCTGGGAAGGATGCTTTCCATTTGCGAGTTCGCGTGCACCCATTCCATGTCCTGCGTATCAATAAAATGCTTTCGTGTGCTGGAGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTCGGAAAGCCACAGGGAACTTGTGCCAGAGTCAGCATTGGTCAGGTTCTTCTGTCTGTTCGTTGCAAGGACAGCAACAGTCATCACGCTCAGGAGGCTCTTCGCCGTGCCAAGTTCAAATTCCCTGGTCGTCAGAAGATTATTGTTAGCAGGAAGTGGGGCTTCACAAAGTTCAACCGCAATGACTATGTCAAGTTGAAGTCTGAGAACCGTATTCAATCTGATGGTGTCAATGCCAAGCTTCTTGGATGCCATGGACCTTTGGCCAAACGTCAACCCGGAAGAGCATTTTTACCTGCTAGTGCTTAG
Protein Sequence:
- >XP_010103855.1|Morus_notabilis|bZIP|XP_010103855.1
MASSNVVIASASPTTNSELPRQSSICSLSTFIADLHHNQTHDDDDEEEEASRNLASVAAMDDILKSIYSESPQPQQLQDHPSESPFPADGVDEVWKRIVAGGTDRRAEVVGGGGDGGAMTLEDFLSKNGAVREEDVMVAVGGYGQFQAAPMVVYGNGSGAATPAARVRRRVVEEPLDKATQQKQRRMIKNRESAARSRERKQPKSAYLVGGESGMRGLVEGFLDPWFFVGEKRKNGMGWAYTVELESLVTQLEEENTRLLREQAEWYEERRKQLMENLVPFLEKKENKKIKEKEIVENFHLQVEKRRTFTLIPVVEKNEEMEKEIAEKLLLQDGWSIADFRVFVRSRRQSTDFAMGRRPARCYRQIKNKPYPKSRFCRGVPDSKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRNDYVKLKSENRIQSDGVNAKLLGCHGPLAKRQPGRAFLPASA