Information report for Tp57577_TGAC_v2_mRNA6397
Gene Details
|
|
Functional Annotation
- Refseq: XP_013446236.1 — plastidal glycolate/glycerate translocator 1, chloroplastic isoform X1
- Swissprot: Q9FVQ4 — PLGG1_ARATH; Plastidal glycolate/glycerate translocator 1, chloroplastic
- TrEMBL: A0A072TTT5 — A0A072TTT5_MEDTR; Membrane protein, putative
- STRING: GLYMA16G15800.1 — (Glycine max)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009658 — Biological Process — chloroplast organization
- GO:0009853 — Biological Process — photorespiration
- GO:0097339 — Biological Process — glycolate transmembrane transport
- GO:1901975 — Biological Process — glycerate transmembrane transport
- GO:0009706 — Cellular Component — chloroplast inner membrane
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0043879 — Molecular Function — glycolate transmembrane transporter activity
- GO:1901974 — Molecular Function — glycerate transmembrane transporter activity
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_012573814.1, XP_012574643.1
- Glycine max: Glyma.08G265600.4.p, Glyma.08G265600.3.p, Glyma.08G265600.1.p, Glyma.16G095200.1.p, Glyma.09G208500.2.p, Glyma.09G208500.1.p, Glyma.01G013600.2.p, Glyma.01G013600.1.p
- Gossypium arboreum: Cotton_A_09739_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A08G1385
- Lotus japonicus: Lj2g3v1510620.1
- Medicago truncatula: Medtr8g070820.1, Medtr8g070820.2
- Prunus mume: XP_008238155.1
- Prunus persica: Prupe.5G027000.1.p
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA6397|Trifolium_pratense|bZIP|Tp57577_TGAC_v2_mRNA6397
ATGATGCCTCCCTATGGCACCCCACCACATCCTTATGTCACAATGTATCCCCATCATGGTGGCATATATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTATGCTATGCCTTCTCCAAATGGTATGGTGGATGCTTCAGGGAATACTCCAGGCAGCAGTGAAGCAGACGGTAAGCCTCACGAGGTGAAGGAAAAATTACCAATCAAAAGATCAAGAGGAAGTATGGGTAGTATGAATATGGTTACAGGAAGAAATAATGAACTTGGTAAAACACCAGGGGCATCTGCCAATGGAATTCATTCCAAAAGTGGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGCAATGAAAACTCCCATAATGACTCTCAATTGAAATCTGGGGAGAGGCATGACTCTTATGAAGATCATGAACCTTCTCAAAATGGCAATTCGGCACATGCTCCTCAAAATGGGGTACTTAATACACCTCCTACAGTTAACCAAACTATGTCTGTCGTGCCTATGTCTGTTGCTGGTCCTCTCACAACTGTTCCTGCTCCCGCTACTAACTTAAATATAGGAATGGAGTATTGGGGAACACCAACTTCATCCACCATTCCTGCAATGCATGGAAAGGTACCTTCTACTGCAGTTGCTGGAGGGATGGTTAATGCTGGGCCACGAGATGGTGTTCATTCACAACTTTGGCTACAGGATGAAAGGGAGCTTAAAAGACAAAGGCGAAAACAGTCTAATAGGGAATCTGCACGTAGATCCAGGTTGCGAAAACAGGCTGAATGTGATGAACTAGCTCAGCGTGCTGAGGTTTTGAATGAAGAAAATGCCTCTCTCCGTGCTGAACTGAGCCGGATCAAGAGTGAGTACGAGAAGGCACTTTCTGAGAATGCAGTTCTCAAGGAGAGACTCGGGGAGATACCAAGGAGCGAGGATCTTGGGCCGGGCCAGAATGATCAGCATGTAGGGTGTGAACACACTGGTTCACGCCTTATCTCTGCTGCTTCAAATCCTCAGAAACTTACCCTTCTGGCTATTTCCATGGCGACCCATTTACTCATATCTCCCTTTTCACTCCTCACAAACCACTCACTAAAACCACCTTCATTCTTTCATTCCACCCTCTCTGCAAACTCAACCCCTCTTCTTCTCCCATGCATAAAAAAATGCTCCATTTTGTGTAACCCAACAACTCCTATAAGGTTGAATTCAAGTTTCTTGCAGAAGGGTAGTCATGGAAATTCCAAAAGCAGACAGCTTTCAACTAAATCAGCTGAAACTGATTCTGGAAGCACTTCTTCATTGACCCAAAATGTGTTTGGGTTGTTACATTTGATTGTGTCTCTGGGGCTTTTTCTTGCTCTGGATCAGTTTTTGAAGAAAGCATTTGTGGCTGCTGCTATCAAATTCCCTAGTGCATTGTTTGGGATGTTTTGTATATTCTCAGTTTTGATAATTCTTGATTCTACTGTGCCACCTGCAGCTAAAGCATTGGTGAACTTCTTTGAACCGGCTTTTTTGTTCATTCAGAGATGGCTCCCTTTGTTCTATGTTCCTTCATTGGTCGTCTTGCCCCTTTCTGTTAAAGATATCCCTGCTGCTTCTGGCATCAAAATTTGCCTTATTGTAGNNNNNNNNNNNNNNNNNNNNNNNNCTATAACAACTCATTATTTGGATATGCTGATCAATGCATTGACATATACACCAGACACGACACTAACACTTGGAGGATGGCTAGCTACACTTTGTGTTGCTGGTTACACAGCTATAGCAGTAAGAAAAGCCGTCAAGACACAATTGGTAGATGCGGAGCCTATGGGAAAGCCCTCTCCATTTTCTACAGTTGAAGTGTGGACATGGAGTGGTATTCTCCTAACATCATTTGTTAGTGCACTATATTATCCAACATTACTAGGGACAAGTGCCAGAACATCCCTTCCGTTTTTGCTTGCATCCACTGTGTTAGGCTACATAGTTGGTTCTGGGTTGCCATCAAATGTGAAGAAAGTCTTCCATCCTATAATTTGCTGTGCACTATCAGCAGTTCTGACAGCATTTGCTTTCGGGTATTTTTCCAAGTTAGGGCTTGATCCTGTTCTAGGATATTACCTTACGAAAGTATCCGCCGATCCTGGAGCTGGTGACATTTTAATGGGATTTTTGGGATCTGTTATTCTCTCCTTTTCCTTCTCTATGTTCAAGCAAAGAAAGCTTGTGAAAAGGCACGCGGCTGAGATTTTCACCTCTGTAATCATCTCAACAATATTCTCGCTGTACTCAACCGCCCTTGTTGGACGTCTTCTTCAATTAGAACCATCCTTAACTGTTTCCATTTTACCCAGATGTATAACAGTGGCGTTGGCCCTCAGCATTGTGTCCTTGTTTGATGGTGCCAATCCATCTCTCACTGCAGCAGTGGTTGTAGTAACTGGTCTGGTTGGGGCAAATTTCGTGCAAGCAACTCTTGATAAACTCAGATTCAGTGATCCGATTGCTCGTGGAATAGCAACTGCTTCTAGTGCTCATGGGCTCGGAACAGCAGCATTGTCTGCTAAAGAACCTGAGGCTCTCCCATTTTGTGCCATTGCTTATGCTTTGAATGGCATATTTGGATCTTTACTATGTTCAGTTCCAATTGTAAGAGAAAGCTTGCTTGCAATTGTTGGTTGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA6397|Trifolium_pratense|bZIP|Tp57577_TGAC_v2_mRNA6397
MMPPYGTPPHPYVTMYPHHGGIYAHPSMPPGSYPFSPYAMPSPNGMVDASGNTPGSSEADGKPHEVKEKLPIKRSRGSMGSMNMVTGRNNELGKTPGASANGIHSKSGGESASEGTSEGSNENSHNDSQLKSGERHDSYEDHEPSQNGNSAHAPQNGVLNTPPTVNQTMSVVPMSVAGPLTTVPAPATNLNIGMEYWGTPTSSTIPAMHGKVPSTAVAGGMVNAGPRDGVHSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLRAELSRIKSEYEKALSENAVLKERLGEIPRSEDLGPGQNDQHVGCEHTGSRLISAASNPQKLTLLAISMATHLLISPFSLLTNHSLKPPSFFHSTLSANSTPLLLPCIKKCSILCNPTTPIRLNSSFLQKGSHGNSKSRQLSTKSAETDSGSTSSLTQNVFGLLHLIVSLGLFLALDQFLKKAFVAAAIKFPSALFGMFCIFSVLIILDSTVPPAAKALVNFFEPAFLFIQRWLPLFYVPSLVVLPLSVKDIPAASGIKICLIVXXXXXXXXXITTHYLDMLINALTYTPDTTLTLGGWLATLCVAGYTAIAVRKAVKTQLVDAEPMGKPSPFSTVEVWTWSGILLTSFVSALYYPTLLGTSARTSLPFLLASTVLGYIVGSGLPSNVKKVFHPIICCALSAVLTAFAFGYFSKLGLDPVLGYYLTKVSADPGAGDILMGFLGSVILSFSFSMFKQRKLVKRHAAEIFTSVIISTIFSLYSTALVGRLLQLEPSLTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFSDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSLLCSVPIVRESLLAIVG*