Information report for Tp57577_TGAC_v2_mRNA23462
Gene Details
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Functional Annotation
- Refseq: XP_004493333.1 — bZIP transcription factor 17
- TrEMBL: A0A2K3NPR1 — A0A2K3NPR1_TRIPR; BZIP transcription factor
- STRING: XP_004493333.1 — (Cicer arietinum)
- GO:0042538 — Biological Process — hyperosmotic salinity response
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0005783 — Cellular Component — endoplasmic reticulum
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn328331
- Arachis hypogaea: Ahy016889
- Cajanus cajan: C.cajan_18140
- Cicer arietinum: XP_004493333.1
- Citrullus lanatus: Cla017444
- Citrus sinensis: orange1.1g035544m
- Glycine max: Glyma.19G126800.1.p, Glyma.03G123200.1.p
- Gossypium arboreum: Cotton_A_20550_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D13G0009, Gh_A13G2071
- Juglans regia: WALNUT_00017669-RA
- Lotus japonicus: Lj1g3v4083180.1
- Malus domestica: MDP0000270677, MDP0000180785
- Manihot esculenta: Manes.09G000300.1.p
- Medicago truncatula: Medtr7g088890.1
Sequences
CDS Sequence:
- >Tp57577_TGAC_v2_mRNA23462|Trifolium_pratense|bZIP|Tp57577_TGAC_v2_mRNA23462
ATGGCTGACCAAATCCTCTCCGATCAACCACCGGAACAACAACCGTCTTCCGATCTCGATTACGACTTCGCCGACCAATTCAACAACGTTCCTATACCTTCATTAGACTTTTTATTCAACGACGATCTTGGAGATCTTGAGATCACGTTCGACGATCTTGATAATCTCTGTATCCCTTCTGATACCGAAGAATTTCTTCTTCCTGATTCATGGAACCCTAACGGTGTTCCAATTTCGCCTATTATTGATAATGAAGGCGTTGTTAATTTTGATTCACCGGAATCAGGTGCTTCTGTTGTTTCTGGTGATCTGAGTCCTGATGTTTCTAGGTTTCTTAATTCTGATTCGGTTTCTGCTGATGATAATGATAATTCGGTTGATGTTGATGTTAAAGTTTCGATGGAGACTGAAAATGCTGAGAATTCTGATCGGGAAGAGTCTTCGAATGGACCGGTTTCGTCTCAGGGATCAGGAAATGGCGGATCGGGTGTATATGAGGCGACGAATTCGCCTTCACATGATTCTGGCCGTTATGAGAGGGATATTTCGTCTTCTCATGAACATGCAATTGTGGAAGAGGGTGTGAAATTGGAAGGGATTGTTAAAGGCTGTGATTTGAAGAGGAAGAAAGAAAGTAGCCATGAAAGTGCTGAGACTCGAACTCCGAAATGTAGCAGGAGATCGTCTTCAATGGAAATCAAGACCCAACAACAACAGCAGCAGCAACAAGCTCAATCTCAATCTCAATCTGGTTTTGATGGTATTGAAGATGAGGATGAGAAGAGGAAGGCGAGGTTGATGAGGAATAGAGAAAGTGCACAGCTTTCTAGACAGAGGAAGAAGCATTATGTGGAGGAGCTTGAGGAGAAAGTAAGATCAATGCATTCAACAATTGCTGATTTGAGTAGTAAGATTACTTATGTTATGGCTGAGAATGCTACACTTAGACAACAATTGAGTGGTGGTGTGATGTGTCCACCTCCTCCGCCGGGTGCTGGGATGTACCCTCATCCTCCAATGGGACCTATGCCTTATCCTTGGATGCCTTGTGCTCCTTATGTTGTTAAACCTCAAGGTTCTCAGGTTCCTTTGGTTCCAATTCCAAGGTTGAAGCCTCAGCAACCGGCTGCGTCTTCCAAGAGTAAAAAGGGTGAGAGTAAAAAGAGTGAGAGTAAGAAAACTGAGGTGAAAACTAAGAAGGTTGCTAGTATTAGTTTGTTGGGTTTGTTTTTATGTATCATGCTTTTTGGTGGACTTGTTCCTATGGTAGATTTTAAGTTTGGAGGTTTAGTTGATAATGTTTCTGGTAGGTCTAGTTATGTTAGTGATAGATGGTTTTATGGTCATGGTGGAGGTAAGATTTGGCCTGTAAATGGTCATATGAATGAATCTGGAAGGGATGGGGAAGTGGGGTTTCCCAATGGAAGGTTTGGTATTTCTGATAGGAATAATTATGAAAGAGGTCGGAAACTAGAAGAAATGAATGAACGGAAAGACTCAAGTTGTGTTGGTCATCGAGACAATGCCAGCGAGCCACTTCTAGCTTCTTTGTATGTTCCTAGGAATGATAAGCTGGTTAAGATTGATGGAAACTTGATAATCCATTCTATCATGGCCAGTGAGAAAGCCATGGCATCTCAAGATGCTCAGGTAAAGAAGGAGAAAAGTGGAACTGGTTTGGCCATTCCTAAAGATTGGGATTCTGCATTGGCTATTCCTGAAGTTGGAAGAAATAGAGGACAGCATCCAAATGTGTACAGAGTTTCTGCAGAACAGAGGAGGGCTATTGGCTCTGGTTCAACTAAAACCTTGAAGGACCATATGAAGTCTTCTGCAACTGATGGTAAAATGCAGCAGTGGTTCCGTGAAGGAATTGCAGGTCCAATGCTAAGTTCTGGCATGTGTACTGAAGTTTTTCAGTTTGATGTTTCTCCTGCTCCTGGAGCTATTGTTCCAGCAACAGCAGTGGGCAATATTTCTACTGAAACTCGTCGTAATGCCACCAATGTCAACAAGAGCAGGAACAGAAGAATCCTCCACACCCTCCCAGATCAACTTCCTGGAACCCGTCTGAACATAACTGAAGAACATGCAAGAAATTTGCCAAAAGACCACCTCCCTGGTAATAAATCGTCTATGGTGGTTTCCGTGCTTGTTGATCCCAAAGAGGCTGGAGACAGTGGTGTTGATGGCATGATGGCTCCAAAGTCGCTCTCTCGGATTTTCGTGGTTGTGCTAATAGATAGTGTCAAGTATGTGACTTACTCATGTGGTCTTCCCCGCGCTTCTCCTTTGGTGACTGCTTATGTTTGA
Protein Sequence:
- >Tp57577_TGAC_v2_mRNA23462|Trifolium_pratense|bZIP|Tp57577_TGAC_v2_mRNA23462
MADQILSDQPPEQQPSSDLDYDFADQFNNVPIPSLDFLFNDDLGDLEITFDDLDNLCIPSDTEEFLLPDSWNPNGVPISPIIDNEGVVNFDSPESGASVVSGDLSPDVSRFLNSDSVSADDNDNSVDVDVKVSMETENAENSDREESSNGPVSSQGSGNGGSGVYEATNSPSHDSGRYERDISSSHEHAIVEEGVKLEGIVKGCDLKRKKESSHESAETRTPKCSRRSSSMEIKTQQQQQQQQAQSQSQSGFDGIEDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTIADLSSKITYVMAENATLRQQLSGGVMCPPPPPGAGMYPHPPMGPMPYPWMPCAPYVVKPQGSQVPLVPIPRLKPQQPAASSKSKKGESKKSESKKTEVKTKKVASISLLGLFLCIMLFGGLVPMVDFKFGGLVDNVSGRSSYVSDRWFYGHGGGKIWPVNGHMNESGRDGEVGFPNGRFGISDRNNYERGRKLEEMNERKDSSCVGHRDNASEPLLASLYVPRNDKLVKIDGNLIIHSIMASEKAMASQDAQVKKEKSGTGLAIPKDWDSALAIPEVGRNRGQHPNVYRVSAEQRRAIGSGSTKTLKDHMKSSATDGKMQQWFREGIAGPMLSSGMCTEVFQFDVSPAPGAIVPATAVGNISTETRRNATNVNKSRNRRILHTLPDQLPGTRLNITEEHARNLPKDHLPGNKSSMVVSVLVDPKEAGDSGVDGMMAPKSLSRIFVVVLIDSVKYVTYSCGLPRASPLVTAYV*