Gene Details:

Protein Features:

Annotation Proteins:

  • Refseq:  XP_018488243.1  — PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
  • Swissprot:  Q9M7Q5  — AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
  • TrEMBL:  A0A397ZC69  — A0A397ZC69_BRACM; Uncharacterized protein
  • TrEMBL:  A0A3P5Z8C9  — A0A3P5Z8C9_BRACM; Uncharacterized protein
  • TrEMBL:  M4E0W2  — M4E0W2_BRARP; Uncharacterized protein
  • STRING:  Bra022409.1-P  — (Brassica rapa)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >Rsa1.0_07148.1_g00003.1|Raphanus_sativus|bZIP|Rsa1.0_07148.1_g00003.1
    ATGAACATGGATGAACTCCTGAAAAGCATATGGACTGCTGAAGAAGCTCAGGCCATGTCCATGACTTCTTCTGCTGCTGCTACAGCCGTTGCGCAACCTTGTGGTGGTGGGAATCTCCAGAGGCAAGGCTCGTCGACATTGCCTAGAACGATTAGTCAGAAGACTGTCGATGAGACTCTAGGGGAGATGACGCTTGAGGAGTTTCTGTTTCGCGCTGGAGTTGTCTGTTCTCAGCAGACGGGTCAGTTCAACAGGAACAATAACAATGGAGCTGCTGGGGGATTAGGCTTTGATTTTGGTTTTGATTTTGCTGACCAAAATCAAAACAACATATCATTCAATGCAGCTTGCAGCGGATGCCTCAAACCATTTTTACTAAACAAGCAAACTAGAATTTGCTGCGCTTGTGGGTATGGTCAACAAGGGTTTCACTGGGGTAACTCCATTAACAATAATAATGGATTAGCCGGGGTCACTGTTGCAGCAACATCTCCAGGGATAAGTAGCGCAGAAAATAACTCTCTGTCACCAGTTCCTTATGTGCTTAACCGTGGAAGAAGCAATACTTGTCTAGAGAAGGTTACCGAGAGGAGGCAAAGGAGGATGATCAAGAACAGGGAATCAGCTGCTAGATCAAGAGCTCGGAAGCAGGCGGCTACTAATCTAGCCAAACTGTTAGGTAGTGCTGAACGAGTTTTGTCGCGTCCCCATTGTAGTTGTCGATATTGCAGGTTGTGCAAGAAGCCATTCCCTTGCGTTTCTGATAGCGTTTGA
Protein Sequence:
  • >Rsa1.0_07148.1_g00003.1|Raphanus_sativus|bZIP|Rsa1.0_07148.1_g00003.1
    MNMDELLKSIWTAEEAQAMSMTSSAAATAVAQPCGGGNLQRQGSSTLPRTISQKTVDETLGEMTLEEFLFRAGVVCSQQTGQFNRNNNNGAAGGLGFDFGFDFADQNQNNISFNAACSGCLKPFLLNKQTRICCACGYGQQGFHWGNSINNNNGLAGVTVAATSPGISSAENNSLSPVPYVLNRGRSNTCLEKVTERRQRRMIKNRESAARSRARKQAATNLAKLLGSAERVLSRPHCSCRYCRLCKKPFPCVSDSV