Gene Details:

  • Gene ID: RrC9010_p1
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Raphanus raphanistrum
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_018452027.1  — PREDICTED: putative clathrin assembly protein At4g02650
  • Swissprot:  Q8GX47  — CAP3_ARATH; Putative clathrin assembly protein At4g02650
  • TrEMBL:  A0A0D3E041  — A0A0D3E041_BRAOL; Uncharacterized protein
  • TrEMBL:  A0A3P6D9G6  — A0A3P6D9G6_BRAOL; Uncharacterized protein
  • STRING:  Bo9g005970.1  — (Brassica oleracea)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0048268  — Biological Process — clathrin coat assembly
  • GO:0030136  — Cellular Component — clathrin-coated vesicle
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0005545  — Molecular Function — 1-phosphatidylinositol binding
  • GO:0030276  — Molecular Function — clathrin binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >RrC9010_p1|Raphanus_raphanistrum|bZIP|RrC9010_p1
    ATGAACAGTATCTTCTCCATAGACGATTTCTCCGATCCCTTTTGGGAATCATCTCCGCCTCTCGATTCGGACTCTGCCAAGGTCGTCACGGCGGATGAATGGACCGTCGAGATGTTTCTCGAAGAGATCGCTTCCTCTGTGAGCTCGGAGCCTGTCGGAAACAACAACGAGAAGAACAACAACAACGCGATCGTCGGTGTATCGTCGGCGCAGTCTCTTCCTTCCGTCTCCGGACAGAACGATTTCGAAGAAGACAGTCGGTTTCGCCGCGATTCCGATGAGTACCGTCGCGTTCTTGAGAACAAGCTCGAGACTGATTGTGCTACTGTTGTAGCTCTTAGGGCTGGTTCTGTGAAGCCTGAAGATTCGACTGGTTCTCCTGAAACTCTGTTCCCACCAGCTCAATCTAGTCCTCTTACTCAAGGTTCTTTGGTGACGCCTGGAGAAGTTGGTGTCACTTCTTCATTACTGGCTGAGGTGAAAAAAACTGGTGTACCGATCAAGCAGGTTACCAGTGGATCATCGAGAGATTATTCTGATGATGATGACCTTGATGAAGAGAATGAAACCACTGGTTCCTTGAAACCAGAGGACGTTAAAAAATCCAGAAGGATGCTGTCAAATCGAGAGTCTGCTAGGCGGTCTAGAAGGAGAAAGCAGGAGCAAACATGTGATCTTGAGACACAGGTTAATGAGCTAAAAGGTGAACATTCATCACTTCTCAAGCAACTGAGCAACATGAATCACAAGTATGATGACGCTGCTGTTGGCAATAGAATACTAAAAGCCGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAGACCGTTAAGAGAGTAACAGGAATGAATCCTATGCTTCTCGGTAGATCAAATGGACATATCAACAACAATAGAATGCCATTAACTGGTAACACCAGGATGGCTTCTTCATGCCTTCCACCTTTTCAACCACAATCAAACCTAAACATGGGGGGACTACCAACCATTCCATCTCCAAGACTCGAAAACAGTTTCATTCCTACTCCTTCCTTAAACTCCCAAACTAACTCTCATTTGCAGAGAATAAGAAACACTCAAACTCACCATCCTGCTCCAACCACTAACCCCTATGGCTGGACTACTGAAACTCAGAACGATTCAGCATGCAAGCTAAGACGCGCGATAGGAGCCGTGAAAGATCAGACAAGCGTAGGGTTAGCCAGAGTGGGAGGTCGAAGCAACTCTTTAACGGAGCTAGAAGTAGCCATCGTGAAGGCAACGCGACACGACGAGTATCCAGCGGAGGAGAAGTACGTCAGGGAGATATTAAGCCTAACGTCTTACTCACGCAACTACGTAAACGCTTGCGTCTCGATCCTCTCGAGACGTCTCAACAGGACCAAGAACTGGTCGGTTGCTCTCAAAACCTTGATTTTGATCCAGCGGATGCTAACGCAAGGCGATAAAGCCTACGAGGAAGAGATCTTCTTCGCGACGAGGCGCGGGAGCAGGCTGCTTAACATGTCTGATTTTAGGGATGCGGATGGGTCTGGTTCTTGGGATTACTCTGCTTTTGTTCGGACGTATGCTCTGTATTTGGACGAACGGCTTGATTTTCGGATGCAAAGAAGGAAAGGGAAAAACATTGAAGGTGGTGATGATGATGATTCCGGTGATGATGATCATCGAGAGACCAAAACCGATAATCGGTCGAGAGCTCTTGTGGTGACGCCTAAGCCGGTCACAAAGATGAAAACAGAGAGAATCTTTATTAGAGTGCAACACTTACAACAGCTTCTTGATCGGTTCTTGGCTTGTCGTCCAACAGGTAATGCAAAGAACAACAGAGTTGTGATTGTGGCTCTGTATCCAATAGTGAAAGACAGTTTTCAGATATATTGCAACATAACAGAGATAATGGCAGTGTTGATAGATAGATTCATGGAACTAGACGTTCATGATTCGATCAAAGTCTATGACATCTTCTGTAGAGTTTCTAAACAGTTGGATGAGTTAGATCCATTTCATGGATGGTGTAAGAAAATGGGAGTTGCAAGATCTTCAGAGTATCCAGAATTGGAGAAGATTACAAAGAAGAAACTTGATATCATGGATGAGTTTATAAGAGATAAATCTGTTTTAGCTGCACAAGCACTAAAGTCACCATCGAGAAAGTCTAACAGATCTGAGGAAGAGGAAATCAAAGACATTCAAGAAGATTTGAACTCCATTAAAGCATTACCAGCACCGAGTCAAGAAGAGGACGAAGAGGAAAAAGAAGAGACGGAAACAAAGAAAGATGTTCAAGAAGTGGTTTCGAGACAAGATCAAGAAGGTGATTTGCTGGATTTAACTGGTGAAGCTGGTGATACAACATGGTCGGTTGGTGATAGTTTGGCGTTAGCGTTGTTCGATGGAGCGGTTGAGACTGAGGCTGTGTCTGGACCGGGGTGGGAAGCGTTTGATGATGATTCGGCGGATTGGGAGACTGCTTTGGTGAAATCAGCGACGAGATTGTCGGCACAAAAGAGTGAGCTTGGAGGTGGGTTTGATCGCTTGTTGCTTGATGGAATGTATCAGTACGGTGCGGTTAATGCGTCCACGGCTTATGGAAGTTATGGGAGTGCGAGTAGCGTTGCGTTTGGTTCTGCAGGAAGACCAGCAGCCTCGATGTTGGCACTGCCTGCGCCACCACCAATGGCCAATGGAAATGGAGGCAGAGATCTGATGACCATGGACCCATTCGCGGCATCTCTAGAGGTGGCTCCACCCTCGTACGTGCAAATGAGTGATATGGAGAAAAAACAAAGATTGGTAATGGAAGAACAAATGATGTGGGATCAGTACAACAGAACTGGAAGACTAGGTCACATGCAAAACCAACAACAACATTTTCAAGTTCCATACTCCATGGGACCTTATTCTTACACACCTCACTACTGA
Protein Sequence:
  • >RrC9010_p1|Raphanus_raphanistrum|bZIP|RrC9010_p1
    MNSIFSIDDFSDPFWESSPPLDSDSAKVVTADEWTVEMFLEEIASSVSSEPVGNNNEKNNNNAIVGVSSAQSLPSVSGQNDFEEDSRFRRDSDEYRRVLENKLETDCATVVALRAGSVKPEDSTGSPETLFPPAQSSPLTQGSLVTPGEVGVTSSLLAEVKKTGVPIKQVTSGSSRDYSDDDDLDEENETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTCDLETQVNELKGEHSSLLKQLSNMNHKYDDAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPMLLGRSNGHINNNRMPLTGNTRMASSCLPPFQPQSNLNMGGLPTIPSPRLENSFIPTPSLNSQTNSHLQRIRNTQTHHPAPTTNPYGWTTETQNDSACKLRRAIGAVKDQTSVGLARVGGRSNSLTELEVAIVKATRHDEYPAEEKYVREILSLTSYSRNYVNACVSILSRRLNRTKNWSVALKTLILIQRMLTQGDKAYEEEIFFATRRGSRLLNMSDFRDADGSGSWDYSAFVRTYALYLDERLDFRMQRRKGKNIEGGDDDDSGDDDHRETKTDNRSRALVVTPKPVTKMKTERIFIRVQHLQQLLDRFLACRPTGNAKNNRVVIVALYPIVKDSFQIYCNITEIMAVLIDRFMELDVHDSIKVYDIFCRVSKQLDELDPFHGWCKKMGVARSSEYPELEKITKKKLDIMDEFIRDKSVLAAQALKSPSRKSNRSEEEEIKDIQEDLNSIKALPAPSQEEDEEEKEETETKKDVQEVVSRQDQEGDLLDLTGEAGDTTWSVGDSLALALFDGAVETEAVSGPGWEAFDDDSADWETALVKSATRLSAQKSELGGGFDRLLLDGMYQYGAVNASTAYGSYGSASSVAFGSAGRPAASMLALPAPPPMANGNGGRDLMTMDPFAASLEVAPPSYVQMSDMEKKQRLVMEEQMMWDQYNRTGRLGHMQNQQQHFQVPYSMGPYSYTPHY