Information report for RrC9010_p1
Gene Details
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Functional Annotation
- Refseq: XP_018452027.1 — PREDICTED: putative clathrin assembly protein At4g02650
- Swissprot: Q8GX47 — CAP3_ARATH; Putative clathrin assembly protein At4g02650
- TrEMBL: A0A0D3E041 — A0A0D3E041_BRAOL; Uncharacterized protein
- TrEMBL: A0A3P6D9G6 — A0A3P6D9G6_BRAOL; Uncharacterized protein
- STRING: Bo9g005970.1 — (Brassica oleracea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0048268 — Biological Process — clathrin coat assembly
- GO:0030136 — Cellular Component — clathrin-coated vesicle
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005545 — Molecular Function — 1-phosphatidylinositol binding
- GO:0030276 — Molecular Function — clathrin binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >RrC9010_p1|Raphanus_raphanistrum|bZIP|RrC9010_p1
ATGAACAGTATCTTCTCCATAGACGATTTCTCCGATCCCTTTTGGGAATCATCTCCGCCTCTCGATTCGGACTCTGCCAAGGTCGTCACGGCGGATGAATGGACCGTCGAGATGTTTCTCGAAGAGATCGCTTCCTCTGTGAGCTCGGAGCCTGTCGGAAACAACAACGAGAAGAACAACAACAACGCGATCGTCGGTGTATCGTCGGCGCAGTCTCTTCCTTCCGTCTCCGGACAGAACGATTTCGAAGAAGACAGTCGGTTTCGCCGCGATTCCGATGAGTACCGTCGCGTTCTTGAGAACAAGCTCGAGACTGATTGTGCTACTGTTGTAGCTCTTAGGGCTGGTTCTGTGAAGCCTGAAGATTCGACTGGTTCTCCTGAAACTCTGTTCCCACCAGCTCAATCTAGTCCTCTTACTCAAGGTTCTTTGGTGACGCCTGGAGAAGTTGGTGTCACTTCTTCATTACTGGCTGAGGTGAAAAAAACTGGTGTACCGATCAAGCAGGTTACCAGTGGATCATCGAGAGATTATTCTGATGATGATGACCTTGATGAAGAGAATGAAACCACTGGTTCCTTGAAACCAGAGGACGTTAAAAAATCCAGAAGGATGCTGTCAAATCGAGAGTCTGCTAGGCGGTCTAGAAGGAGAAAGCAGGAGCAAACATGTGATCTTGAGACACAGGTTAATGAGCTAAAAGGTGAACATTCATCACTTCTCAAGCAACTGAGCAACATGAATCACAAGTATGATGACGCTGCTGTTGGCAATAGAATACTAAAAGCCGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAGACCGTTAAGAGAGTAACAGGAATGAATCCTATGCTTCTCGGTAGATCAAATGGACATATCAACAACAATAGAATGCCATTAACTGGTAACACCAGGATGGCTTCTTCATGCCTTCCACCTTTTCAACCACAATCAAACCTAAACATGGGGGGACTACCAACCATTCCATCTCCAAGACTCGAAAACAGTTTCATTCCTACTCCTTCCTTAAACTCCCAAACTAACTCTCATTTGCAGAGAATAAGAAACACTCAAACTCACCATCCTGCTCCAACCACTAACCCCTATGGCTGGACTACTGAAACTCAGAACGATTCAGCATGCAAGCTAAGACGCGCGATAGGAGCCGTGAAAGATCAGACAAGCGTAGGGTTAGCCAGAGTGGGAGGTCGAAGCAACTCTTTAACGGAGCTAGAAGTAGCCATCGTGAAGGCAACGCGACACGACGAGTATCCAGCGGAGGAGAAGTACGTCAGGGAGATATTAAGCCTAACGTCTTACTCACGCAACTACGTAAACGCTTGCGTCTCGATCCTCTCGAGACGTCTCAACAGGACCAAGAACTGGTCGGTTGCTCTCAAAACCTTGATTTTGATCCAGCGGATGCTAACGCAAGGCGATAAAGCCTACGAGGAAGAGATCTTCTTCGCGACGAGGCGCGGGAGCAGGCTGCTTAACATGTCTGATTTTAGGGATGCGGATGGGTCTGGTTCTTGGGATTACTCTGCTTTTGTTCGGACGTATGCTCTGTATTTGGACGAACGGCTTGATTTTCGGATGCAAAGAAGGAAAGGGAAAAACATTGAAGGTGGTGATGATGATGATTCCGGTGATGATGATCATCGAGAGACCAAAACCGATAATCGGTCGAGAGCTCTTGTGGTGACGCCTAAGCCGGTCACAAAGATGAAAACAGAGAGAATCTTTATTAGAGTGCAACACTTACAACAGCTTCTTGATCGGTTCTTGGCTTGTCGTCCAACAGGTAATGCAAAGAACAACAGAGTTGTGATTGTGGCTCTGTATCCAATAGTGAAAGACAGTTTTCAGATATATTGCAACATAACAGAGATAATGGCAGTGTTGATAGATAGATTCATGGAACTAGACGTTCATGATTCGATCAAAGTCTATGACATCTTCTGTAGAGTTTCTAAACAGTTGGATGAGTTAGATCCATTTCATGGATGGTGTAAGAAAATGGGAGTTGCAAGATCTTCAGAGTATCCAGAATTGGAGAAGATTACAAAGAAGAAACTTGATATCATGGATGAGTTTATAAGAGATAAATCTGTTTTAGCTGCACAAGCACTAAAGTCACCATCGAGAAAGTCTAACAGATCTGAGGAAGAGGAAATCAAAGACATTCAAGAAGATTTGAACTCCATTAAAGCATTACCAGCACCGAGTCAAGAAGAGGACGAAGAGGAAAAAGAAGAGACGGAAACAAAGAAAGATGTTCAAGAAGTGGTTTCGAGACAAGATCAAGAAGGTGATTTGCTGGATTTAACTGGTGAAGCTGGTGATACAACATGGTCGGTTGGTGATAGTTTGGCGTTAGCGTTGTTCGATGGAGCGGTTGAGACTGAGGCTGTGTCTGGACCGGGGTGGGAAGCGTTTGATGATGATTCGGCGGATTGGGAGACTGCTTTGGTGAAATCAGCGACGAGATTGTCGGCACAAAAGAGTGAGCTTGGAGGTGGGTTTGATCGCTTGTTGCTTGATGGAATGTATCAGTACGGTGCGGTTAATGCGTCCACGGCTTATGGAAGTTATGGGAGTGCGAGTAGCGTTGCGTTTGGTTCTGCAGGAAGACCAGCAGCCTCGATGTTGGCACTGCCTGCGCCACCACCAATGGCCAATGGAAATGGAGGCAGAGATCTGATGACCATGGACCCATTCGCGGCATCTCTAGAGGTGGCTCCACCCTCGTACGTGCAAATGAGTGATATGGAGAAAAAACAAAGATTGGTAATGGAAGAACAAATGATGTGGGATCAGTACAACAGAACTGGAAGACTAGGTCACATGCAAAACCAACAACAACATTTTCAAGTTCCATACTCCATGGGACCTTATTCTTACACACCTCACTACTGA
Protein Sequence:
- >RrC9010_p1|Raphanus_raphanistrum|bZIP|RrC9010_p1
MNSIFSIDDFSDPFWESSPPLDSDSAKVVTADEWTVEMFLEEIASSVSSEPVGNNNEKNNNNAIVGVSSAQSLPSVSGQNDFEEDSRFRRDSDEYRRVLENKLETDCATVVALRAGSVKPEDSTGSPETLFPPAQSSPLTQGSLVTPGEVGVTSSLLAEVKKTGVPIKQVTSGSSRDYSDDDDLDEENETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTCDLETQVNELKGEHSSLLKQLSNMNHKYDDAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPMLLGRSNGHINNNRMPLTGNTRMASSCLPPFQPQSNLNMGGLPTIPSPRLENSFIPTPSLNSQTNSHLQRIRNTQTHHPAPTTNPYGWTTETQNDSACKLRRAIGAVKDQTSVGLARVGGRSNSLTELEVAIVKATRHDEYPAEEKYVREILSLTSYSRNYVNACVSILSRRLNRTKNWSVALKTLILIQRMLTQGDKAYEEEIFFATRRGSRLLNMSDFRDADGSGSWDYSAFVRTYALYLDERLDFRMQRRKGKNIEGGDDDDSGDDDHRETKTDNRSRALVVTPKPVTKMKTERIFIRVQHLQQLLDRFLACRPTGNAKNNRVVIVALYPIVKDSFQIYCNITEIMAVLIDRFMELDVHDSIKVYDIFCRVSKQLDELDPFHGWCKKMGVARSSEYPELEKITKKKLDIMDEFIRDKSVLAAQALKSPSRKSNRSEEEEIKDIQEDLNSIKALPAPSQEEDEEEKEETETKKDVQEVVSRQDQEGDLLDLTGEAGDTTWSVGDSLALALFDGAVETEAVSGPGWEAFDDDSADWETALVKSATRLSAQKSELGGGFDRLLLDGMYQYGAVNASTAYGSYGSASSVAFGSAGRPAASMLALPAPPPMANGNGGRDLMTMDPFAASLEVAPPSYVQMSDMEKKQRLVMEEQMMWDQYNRTGRLGHMQNQQQHFQVPYSMGPYSYTPHY