Information report for RrC2179_p5
Gene Details
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Functional Annotation
- Refseq: XP_018488365.1 — PREDICTED: UBP1-associated protein 2A
- Refseq: XP_018488366.1 — PREDICTED: UBP1-associated protein 2A
- Refseq: XP_018488367.1 — PREDICTED: UBP1-associated protein 2A
- Refseq: XP_018488368.1 — PREDICTED: UBP1-associated protein 2A
- Swissprot: Q9LES2 — UBA2A_ARATH; UBP1-associated protein 2A
- TrEMBL: A0A3N6QC44 — A0A3N6QC44_BRACR; Uncharacterized protein
- STRING: Bo8g091180.1 — (Brassica oleracea)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006952 — Biological Process — defense response
- GO:0008219 — Biological Process — cell death
- GO:0009693 — Biological Process — ethylene biosynthetic process
- GO:0010150 — Biological Process — leaf senescence
- GO:0005634 — Cellular Component — nucleus
- GO:0005829 — Cellular Component — cytosol
- GO:0000166 — Molecular Function — nucleotide binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0017091 — Molecular Function — AU-rich element binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G41060, AT3G56850.1
- Brassica napus: GSBRNA2T00155911001, BnaA04G0033800ZS, GSBRNA2T00126238001, GSBRNA2T00087280001, GSBRNA2T00037060001
- Brassica oleracea: XP_013605050.1, XP_013587796.1, XP_013587795.1, XP_013631588.1
- Brassica rapa: XP_009116385.1, XP_009116383.1, XP_009139071.1, XP_009104023.1
Sequences
CDS Sequence:
- >RrC2179_p5|Raphanus_raphanistrum|bZIP|RrC2179_p5
ATGGCTAAGAAGAGAAAGCTCGAAGCGCAACTCATCGCCGAGGCTTCTTCTGAACCGTCGTCGCAGAAGAAGATTGCAACCAACAACAATCAGCTTAATCAGAAAGAGGTCGAATACGAGGAAGTAGAGGAAGAGCACGAGGAGGAAGTCGAAGAAGACGACAACGATGATAACGACGAAGAAGAAGAAGATGACAATCGTATGGTGGCGGCGGCGGCGTCGGGATCTGGGAATCATCAAGGAGATGACGCCGACGACGACGACGAGCCGATTCAAGATCTGTTGGAGCCGTTTTCGAAGGAACAGCTTCTGAGTCTTCTCAAGGAAGCTGCGGAGAAGCATCGTGATGTAGCCAATCGAATCCGCGAAGTGGCTGATGAGGATCCCGTTCATAGGAAGATCTTCGTGCACGGGCTTGGATGGGATACTAAAACCGAGACGCTCATAGAAGCTTTCAAGCAGTACGGAGAGATCGAAGATTGCAAGGCTGTGTTTGATAAGGTCTCGGGGAAATCTAAAGGATATGGATTTATTCTGTTTAAGTCTAGATCAGGTGCTCGTCACGCGCTTAAGCAGCCTCAGAAGAAGATCGGGAGTCGTATGACTGCGTGTCAGTTAGCTTCTAAAGGACCAGTCTTTGGAGGAAACAACCCTGTGGCTGCTTCCTCAGGTGCTTCTATTGCTCCTGCTCAGCATTCGAACTCTGAGCATACACAGAAGAAGATCTATGTCAGTAACGTTGGAGCAGAGCTGGATCCGCAGAAGTTGCTTGCGTTTTTCTCGAAGTTTGGTGAGATTGAGGAAGGTCCTTTGGGTCTTGATAAGTATACGGGGAGACCTAAAGGCTTCTGTCTCTTTGTTTATAAGTCAGCTGAGAGCGCCAAGAGGGCTTTAGAGGAGCCGCACAAGACCTTCGAGGGCCACGTCTTGCATTGCCAGAAGGCCATAGATGGTCCTAAACCTGGCAAGCAGCAGCAACAGTTTAACAGCAATCCTCGTTTCCCGAGGAATGATAACAGTGGTGGTTACGGAACCCCTACTGGTCATGGACATCTCATGGCTGGTAACCAAGCCGGGATGGGTACTCCAGTTCAAGCGATGAACCCAGCCTTTGGACAGGCCTTGACAGCTTTGTTAGCAACGCAGGGAGGTTTGGCGTTTAACCCAGCTCTTGGGCAGGCTTTGTTGGGTTCGCTGGGGACAGCTGCAGGTGTAAACCCAGGGGCTGGAGTTGGAATGCCAACTGGTTATGGAACTCAACCTATGACACCTGGGAGTATTCCTGGGTATGGTGGACAACCTGGGTTGCAAGGTGGCTATCAGACCCCTCCACCTGGTCAGGGTGGTACAGGAAGAGGGCAACATGGTGTCGGGCATTATCCTTACATGGGCCATACAGTCAGATGGTTCGGAGCGAAGACTTATCCGTCTCTCCTGTCCGGTTTGGAAGCGAAGCTGCTGCCCTGTACGGGCATTGACGTTTTGGAGAGATCTGGCCCGGAGAGTGATTCCAAGAGGGGTGTTGTTGAAGAACTTAGATCTCAGTCTTTGAATAGGCAAGGCTCTCTCTATAGCTTAACACTCGACGAGGTTCAGACCCACTTGGGGAGTTCTGGTAAAGCGCTTGGAAGCATGAATCTTGACGAACTTCTCAAGAGTGTTTGCTCTGTTGAAGCTAATCAGCCATCTTCCATGGCTCTGAACGGTGCTGCTTCTGGTGCTGCAACTCAGGAGGGTCTCTCTCGTCAGGGAAGTCTGACTTTGCCGCGGGATCTTAGCAAAAAGACTGTTGAGGAGGTCTGGAAAGACATTCAGCAGGACAAGAATGGAGGTAGTAGTGGTGGTCGTCATGAGAGGAGAGATAAGCAGCCTACTTTAGGCGAAATGACGCTTGAAGACTTGTTGTTGAAAGCAGGAGTGGTCACCGAGACAGTTCCTGGTGGAAGTGCTGGTATGGAGCAAAACATAACTCCGGCGGTTACCCCATGGGTTCAGTATCATCAGCTTCCGTCAATGCCGCAGCCTCAATCATTCATGCCGTATCCGGTCGCAGACATGCAAGCAATGGTATCTCAGTCTTCTTTGATGGGTGGTTTATCAGACACACAAACTCCAGGGAGGAAGAGGTTAGCTTCAGGGGAAGTTGTGGAGAAGACTGTGGAGAGGAAACAGAAGAGAATGATAAAGAACAGAGAGTCTGCTGCTCGTTCTCGTGCTAGGAAACAGGCTTATACTCATGAGTTAGAGATCAAAGTTTCACGGTTAGAAGAAGAAAATGAAAGACTCAGGAGGCAAAAGGAGGTAGAGAAGATTCTCCCAAGTGCACCACCACCTGATCCCAAGCGGCAGCTGAGGAGGACAAGCTCAGCTCCTTTCTGA
Protein Sequence:
- >RrC2179_p5|Raphanus_raphanistrum|bZIP|RrC2179_p5
MAKKRKLEAQLIAEASSEPSSQKKIATNNNQLNQKEVEYEEVEEEHEEEVEEDDNDDNDEEEEDDNRMVAAAASGSGNHQGDDADDDDEPIQDLLEPFSKEQLLSLLKEAAEKHRDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKVSGKSKGYGFILFKSRSGARHALKQPQKKIGSRMTACQLASKGPVFGGNNPVAASSGASIAPAQHSNSEHTQKKIYVSNVGAELDPQKLLAFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSAESAKRALEEPHKTFEGHVLHCQKAIDGPKPGKQQQQFNSNPRFPRNDNSGGYGTPTGHGHLMAGNQAGMGTPVQAMNPAFGQALTALLATQGGLAFNPALGQALLGSLGTAAGVNPGAGVGMPTGYGTQPMTPGSIPGYGGQPGLQGGYQTPPPGQGGTGRGQHGVGHYPYMGHTVRWFGAKTYPSLLSGLEAKLLPCTGIDVLERSGPESDSKRGVVEELRSQSLNRQGSLYSLTLDEVQTHLGSSGKALGSMNLDELLKSVCSVEANQPSSMALNGAASGAATQEGLSRQGSLTLPRDLSKKTVEEVWKDIQQDKNGGSSGGRHERRDKQPTLGEMTLEDLLLKAGVVTETVPGGSAGMEQNITPAVTPWVQYHQLPSMPQPQSFMPYPVADMQAMVSQSSLMGGLSDTQTPGRKRLASGEVVEKTVERKQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRRQKEVEKILPSAPPPDPKRQLRRTSSAPF