Gene Details:

  • Gene ID: PSME_00032287-RA
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Pseudotsuga menziesii
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_011628985.1  — bZIP transcription factor TRAB1 isoform X2
  • Refseq:  XP_020517548.1  — bZIP transcription factor TRAB1 isoform X2
  • Swissprot:  Q9M7Q5  — AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
  • TrEMBL:  A0A0C9S8B3  — A0A0C9S8B3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11777_3031 transcribed RNA sequence
  • STRING:  ERM93465  — (Amborella trichopoda)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0009409  — Biological Process — response to cold
  • GO:0009414  — Biological Process — response to water deprivation
  • GO:0009651  — Biological Process — response to salt stress
  • GO:0009737  — Biological Process — response to abscisic acid
  • GO:0010152  — Biological Process — pollen maturation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >PSME_00032287-RA|Pseudotsuga_menziesii|bZIP|PSME_00032287-RA
    GTTGTTTTTGAGATTGCTGAGACAGTGGATGTAATTGAGTTTGCAATCGATATTTTGCATCAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGACCAAAGATGGGAGGGTTTCCATTGGCTAGACAGGCTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTGTGGCTGCAGCAATGGGAGCAGTAGAAGGGGGGAATGGGGTAAATCTTCAGAGGCAGGGCAGTTTGCAGAGACAGGGGTCATTGACCCTGCCCAGGACTCTCAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCGGTGATGTGAATGGGAGTGCGCCTGCAGGTCAGGCAAGGCAGCCGACTTTTGGAGAGATGACATTGGAAGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGCAGTCATTTGGGGCGTTTCGGAGTGCTTTAGAGGGTGAATTCCATGCAAATATGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGGCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGAGCAGGGGGTGTGTCTGCGCTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCTACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAACAGCAGCAAACTGACTGGCTTAATAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAGCAGCAGCAGCAGCAGCTTCTCAACCATCAGGCAGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGATGGTAGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTCGGGGGTACTATGGGAAATGGCGGTCTCGGCGCTGGATTGGGAGGGGTTGGTGGTCTCGGCGCTGGATTGGGTGGGGCGTTTGGACCTTCGGCGCTCGCGATGGGAGCAGGATCTCCTGTCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGTCATCTAGACAACCCTACAATATCACCTGTTCCATATGGTTTGGATGGAGGGATGAGGGGAAGGAAGAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCCAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAACGGCGCAAAAAGCAGATTCTGGAGGTGGCGGCTCCTATGGCAAAGCAGTTAGCAGCAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCATGGTGA
Protein Sequence:
  • >PSME_00032287-RA|Pseudotsuga_menziesii|bZIP|PSME_00032287-RA
    VVFEIAETVDVIEFAIDILHQSRVMVSSHSAMTPALQGGPKMGGFPLARQASIYSLTLDEFQNSLGEPGKNFGSMNMDEFLKNIWTAEESQAVAAAMGAVEGGNGVNLQRQGSLQRQGSLTLPRTLSRRTVDDVWREIHKESGDVNGSAPAGQARQPTFGEMTLEDFLVKAGVVREDSEQGAAQQSFGAFRSALEGEFHANMAERNGDNRLGIGNSLGLGFSERGHRNGEVGNNKSGAGGVSALSLSPTNVIPNHATMDMVNLDAFKHQQQQTDWLNNHYRNATAAALAQQQHQQQQQQLLNHQAAAEAAAAYATNVKMVGGNAALMGQGGLGGGLALGGTMGNGGLGAGLGGVGGLGAGLGGAFGPSALAMGAGSPVSPLSSDGVGPSHLDNPTISPVPYGLDGGMRGRKRGLDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEVNQLKEENMKLKKQQAEMAERRKKQILEVAAPMAKQLAAKTRPLRRTLTGPW