Gene Details:

  • Gene ID: PH01000353G0690
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Phyllostachys heterocycla
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015632857.1  — bZIP transcription factor 16 isoform X1
  • Refseq:  XP_015632859.1  — bZIP transcription factor 16 isoform X1
  • Refseq:  XP_015632860.1  — bZIP transcription factor 16 isoform X1
  • Refseq:  XP_015632861.1  — bZIP transcription factor 16 isoform X1
  • Refseq:  XP_025879940.1  — bZIP transcription factor 16 isoform X1
  • Refseq:  XP_025879941.1  — bZIP transcription factor 16 isoform X1
  • TrEMBL:  A0A0E0BSB4  — A0A0E0BSB4_9ORYZ; Uncharacterized protein
  • STRING:  OGLUM12G12370.1  — (Oryza glumipatula)

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >PH01000353G0690|Phyllostachys_heterocycla|bZIP|PH01000353G0690
    ATGGGAAAAGGAGATGTGGCCACTAGGTCAAAATCCCAGAAATCGTCAGCAACACGGAATGAACAGGGTACACCTACTAATCCGCCTACAGCATATACTGACTGGTCTCAGTTTCAGGCATACTATAATGCTGCTGGGACGGCTCCAATGACCCCACCGGCTTTTTTTCATTCAACTGTGGCTCCAAGTCCTCAGGGGCACCCCTACATGTGGGGTCCACAGATGATGCCTCATTATGGGACACCACCACCATATGCAGCGATGTATGCCCAAGGCACACCATATCAGCAGGCACCTCTGCCACCGGGTTCACACCCATACAGTCCTTATCCTGTGCAATCACCAAATGGGACAGTTCAAACTCCTACATCTGGTGCTGGCGGTACAGAGACAGATAAGTCGAGTAAAAATAAGCGGAAGACTCCCCTGAAGAGATCCAAAGGAAGCTTAGGTAGTTTGGATGTAGTTACAACCAAAAATAAAAAGGCACCTGCAAAACCTTTAGCATCATCCTCCAATGAAGGTTCTTCACAAAGTGAGAGTGGAAGCAGAAGTTACTCTAATGGAAGCAGTACAAATTCAAAAAGTGGTTCAAGGGCAAAGGATGATTCTGAGCATGGACAGGGTAATGATGCTAGCAATAAAGGAGTCACTGCTCAGAGCTCTGCAGTTGAGCCCACACAAGCGGCTTCTGGGCCAGTTGCGCTTAACCCTATGATGCCATATTGGCCGGTTCCCCCTCCCATGGCTGGCCCAGCAACTAGTCTAAACATGGGAATGGATTACTGGGGTGCTCCTACTTCCGTATCCATGCATGGTAAAGTTATTGCAGCATCAACATCAGCTCCTTCGTCTAATTCACGTGATATTGTTCCGAGTGATCCGGCCATACAGGCTGAATGGGAGGAAGTAGCCACTCGAGCTGATTTGCTAAAGCAGGAAAACAGTTCACTTAAAGAAGAATTGAAACAACTTCAGGAGAAGTGTGATAGCTTGACCTCAGAAAATACATCTTTACATGAAAAGCTTAAAGAGCTTGAAGGTGAGAAATCAAATGGAAATCGGTATAAACAGTGA
Protein Sequence:
  • >PH01000353G0690|Phyllostachys_heterocycla|bZIP|PH01000353G0690
    MGKGDVATRSKSQKSSATRNEQGTPTNPPTAYTDWSQFQAYYNAAGTAPMTPPAFFHSTVAPSPQGHPYMWGPQMMPHYGTPPPYAAMYAQGTPYQQAPLPPGSHPYSPYPVQSPNGTVQTPTSGAGGTETDKSSKNKRKTPLKRSKGSLGSLDVVTTKNKKAPAKPLASSSNEGSSQSESGSRSYSNGSSTNSKSGSRAKDDSEHGQGNDASNKGVTAQSSAVEPTQAASGPVALNPMMPYWPVPPPMAGPATSLNMGMDYWGAPTSVSMHGKVIAASTSAPSSNSRDIVPSDPAIQAEWEEVATRADLLKQENSSLKEELKQLQEKCDSLTSENTSLHEKLKELEGEKSNGNRYKQ*