Information report for Oropetium_20150105_17443A
Gene Details
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Functional Annotation
- Refseq: XP_025812375.1 — FT-interacting protein 1-like
- Swissprot: Q60EW9 — FTIP7_ORYSJ; FT-interacting protein 7
- TrEMBL: A0A2S3HHY8 — A0A2S3HHY8_9POAL; Uncharacterized protein
- TrEMBL: A0A2T7DWF3 — A0A2T7DWF3_9POAL; Uncharacterized protein
- STRING: Pavir.Db00755.1.p — (Panicum virgatum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005618 — Cellular Component — cell wall
- GO:0005783 — Cellular Component — endoplasmic reticulum
- GO:0009506 — Cellular Component — plasmodesma
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Oropetium_20150105_17443A|Oropetium_thomaeum|bZIP|Oropetium_20150105_17443A
ATGATGCAAAGGCCACCATTCCGTACAGAGGAGTACTCATTGAAGGAGACCTCCCCTCACCTTGGAGGGACCGCAGCTGGTGACAAACTCACTACCACCTATGACTTGGTTGAGCAGATGCAGTATCTGTATGTCCGAGTGGTCAAAGCTAAGGACCTTCCAAACAAGGACATCACTGGAAGCTGTGATCCGTATGTCGAGGTGAAGCTGGGGAATTATAAGGGCACAACTCGACATTTTGAAAAAAAAAACAACCCAGAGTGGAACCAGGTCTTTGCATTTTCAAAGGAGCGGATTCAGTCATCATCTGTGGAGATTGTAGTGAAGGACAAGGATTTTTTGAAGGATGATTTCGTTGGGCGTGTTGTATTTGATCTGAATGAGGTCCCCAAGCGAGTGCCACCTGATAGTCCACTGGCTCCGCAGTGGTATCGATTGGAAGACCGACATGGGCACAAGGGGAAAGGCGAGTTGATGTTAGCTGTTTGGATGGGTACTCAAGCAGATGAAGCATTCCCTGAAGCATGGCATTCTGATGCAGCTTCTGTCCCTGGTGATGGCCTTGCAAGCATTAGATCAAAAGTTTATCTCACTCCAAAGCTTTGGTATCTGCGTGTCAATGTCATTGAAGCACAGGATCTTATACCACATGATAGGACCAGGTTCCCTGAGGTCTATGTTAAAGCCATGCTAGGCAATCAAGTACTCAGAACCCGGTCATCCGCAAGCCGGACTCTGAATCCAATGTGGAATGAGGACTTGATGTTTGTTGCTGCTGAACCGTTTGAGGAACACCTGGTTTTAAGCGTAGAGAACAGGGTGGCACCAGGAAAGGATGAAGTGCTTGGGAGGACAATCATTTCACTGCATCATGTACCCCGGAGGCTGGATCACAAGTTGCAGAACAGCCAATGGTTCAATCTTGAGAAGCATGTGATGGTGGATGGTGAGCAAAAGAAGGAGACCAAGTTTTCAAGCCGGATTCACTTGAGAATTTGTCTTGAAGGTGGATATCATGTCTTGGACGAGTCAACACATTACAGTAGTGATTTAAGGCCAACTGCAAAACCTTTATGGAAACCCAGCATTGGCATTCTTGAGCTCGGTATCTTAACAGCACAGGGCTTGTTGCCAATGAAGACCAAGGATGGGCGTGGAACAACTGATGCCTATTGTGTTGCCAAGTATGGACAGAAATGGGTCAGGACAAGGACTATAATTGACAGTTTCACTCCAAAATGGAACGAACAGTATACCTGGGAAGTGTATGATCCATGCACCGTGATCACTATTGGTGTATTTGACAATTGCCACTTGAATGGTGGAGAAAAGGCTAATGGTGCCAGGGACACACGCATTGGTAAAGTCCGCATCCGCCTCTCAACGCTTGAAACTGATCGGGTCTATACCCACTCATATCCTCTTATCGTTTTGACGCCTGCTGGTGTTAAGAAAACGGGTGAGGTGCAGCTTGCCGTTCGGTTCACATGCTCATCACTGCTCAACTTGATGCATCTGTACTCACAGCCCTTGCTGCCCAAGATGCATTATGTGCACCCATTGTCCGTGATACAGGTGGACAACCTTAGGCGCCAAGCCACAAACATCGTCTCAACAAGGCTGAGCAGAGCTGAACCACCACTGCGGAAGGAAATTGTGGAGTACATGTTGGACGTGGACTCTCACATGTGGAGCATGCGAAAGAGCAAGGCTAACTTTTTCCGTATCATGGGTGTCCTGAGCCCCCTGATTGCAGTGGCTAGGTGGTTTGATCAGATTTGTCACTGGAGGAATCCGCTGACCACAATTCTGATCCACATCCTCTTTGTGATACTGGTCTTGTACCCAGAGCTGATACTGCCCACGATATTTCTCTACCTGTTCCTGATTGGTGTATGGTACTACAGGTGGCGGCCAAGACAGCCACCACACGTGGATACTCGCCTCTCACATGCAGAGACTGCCCATCCAGATGAGCTTGATGAAGAGTTTGACACCTTCCCAACTTCTCGCCCCCCGGATATAGTGAGGATGCGGTATGACCGGCTGCGAAGCGTAGCTGGAAGGATTCAGACTGTTGTTGGTGACCTTGCGACACAAGGAGAGAGGCTGCAGTCCCTGCTGAGCTGGAGAGACCCCAGGGCAACCGCACTGTTTGTGACGTTCTGTTTCATTGCTGCCATCGTCCTGTACGTCACACCATTCCGCGTTGTGGTCTTCCTTGCAGGCCTGTACATCCTGAGGCATCCAAGGTTCCGTCACAAGCTGCCTTCTGTCCCGCTCAACTTCTTCAGGAGGCTGCCGGCAAGGACTGATAGCATGCTGAGAAGGGATCCTGAAGGATATGACATGCCATCTGATTTGGATCAAGCCCTCCTCTACTTTGATGGTCACCAAACTAAACCATCAATCCAGGAACAACTACGCGATGCTGCCGGAGGCGGCAAGCGCGGTGGCGCGGTGGCCTCGAGCTCGGAGCAGGAAGGCCCCCGGACGCCAGATCCCAAGACGCTGCGAAGGCTCGCGCAGAATAGGGAGGCCGCGAGGAAGAGCAGGCTCAGGAAGAAGGATCAGGCTGGCACATCTAGAACAGGAGATACAGATGGCAAGAACTCAGTGCATCACATGCTTACACAAACGTGGGGTGATGGGGTGCGTGCAGATGCCGCGCTGTTCAACCTGGAATACGAGCGGTGGCTGGGTGACCACAGTAAGGTGATCGCGCAGCTCCGTGCCGCCGCGGAGGAGCACCGGCCGGACGGCGAGCTGCGCGCGTACGCCGACGAGGCCGCCGCCCATTATGGCACGCTGATGGCCCACAAGGCCCGGCTCGCCGCGGCCGACCCGCTCCACCTCCTCTCCGGGCTGTGGAAGGGCGCCGCCGAGCGCTGCCTCCTCTGGATCGGCGGCTTCCGCCCCTCCGAGCTCATCAAGGTCGTGCTGCGGCACGTGGAGCCGCTGGCGGAGCAGCAGGCGGCGGCGACGTGCGAGGTGCAGGATTCGGCGCGGCGAGCTGAGGAGGCGCTCGACGGCGAGCTGGGGTCCCTGCTCCGGTCGCTCTCCGAGGTCGTCTCCAGCGACCCCGCGCAGACGCCGCCGATGTATGGGCAGCTGTACAACCCGGCAGACGTCGCCGGGTACATGGGCCACATGCACATGGCCATCGCCATGGACAAGCTCGCCGCACTCGGGACATTCCTCAGACAGGTGAACTGCAACTCTTCACTCTCTCTCTGCCACTTCATCGTCGAGTTCTCAGACATGCGTATACATGCTGGCATGCTCAACGACGGTGAGATGATGATGCAGGCGGATGAGCTGCGGATGCAGACGCTGCAAGCGCTCCGGCAGGTGCTGACGGCGAGGCAGGCGGCGCGATGCTTCCTCAAGGACACCAACCCTCTGCTGGGCGAGCAATGGCCCAAGGGCGCAGCCGGCCCTGCGCGCCCGTCCGGCGGCGGCGGTGCGCTCGCCGGGTGGCTGGGCGTGGACAAGCCGTCGAGCACGTACGACCTGGTCGAGCAGATGTTCTTCCTGTACGTGCGCGTGGTGAAGGCCAAGGACCTGCCCCCGAACCCCATCACCGGCGCGGCCATGGACCCGTACGTCGAGGTCCGTCTGGGCAACTACAAGGGCACCACGCGGCACTTCGACCGGCGGCCGAACCCGGAGTGGGACCAGGTGTTCGCCTTCTCCAAGTCGCGCGTGCAGTCCAATGTCCTCGAGGTGTTCCTCAAGGACCGCGAGATGATCGGCCGCGACGACTACGTCGGCAAGGTGGTCTTCGACCTCGCCGAGGTGCCGACGCGCGTGCCGCCCGACAGCCCGCTGGCGCCGCAGTGGTACCGCCTCGAGGACCGGCGCGGCGACAGGAAGGTGCGCGGCGAGCTGATGCTGGCTGTGTGGATCGGCACGCAGGCCGACGAGGCGTTCCCGGAGGCGTGGCACTCGGACGCCGCGACCGTGCGCGGCGAGGGTGTGGCCAGCGTGCGGTCCAAGGCCTACGTGTCGCCCAAGCTCTGGTACCTCCGCGTCAACGTCATCGAGGCGCAGGACGTGCAGCCGCAGTCGCAGCGGGGACCCGGCGGCCGCGCGCCGGAGGTGTTCGTGAAGGCGCAGGTCGGGCAGCAGATCCTCAAGACGTCCGTGGTGCCAGCGCCGACGCTGAACCCGCGCTGGAACGAGGACCTGGTGTTCGTCGTCGCCGAGCCGTTCGAGGAGCAGCTGGTGCTCGCCGTCGAGGACCGGGTGTCGCCGCAGAAGAACGACCTCCTGGGCCGCGTCGCGCTGCCGCTCACGCTCTTCGAGAAGCGGCTGGACCACCGGCCGTTCGTGCAGTCCCGGTGGTTCGACCTCGAGCGCCGCGTCCACCTCCGCGCCTGCCTCGAGGGCGCGTACCACGTTATGGACGAGTCCACCATGTACATCAGTGACACCCGCCCCACGGCGCGCCAGCTCTGGAAGCCGCCCGTCGGCGTGCTCGAGGTCGGCATCCTCGGCGCCTACGGCCTGCAGCCCATGAAGAACCGCGACGGCCGCGGCGCCACCGACGCCTACTGTGTCGCCAAGTACGGCCAGAAGTGGGTGCGCACGCGCACCATGATCGGCACCTTCAACCCCACGTGGAACGAGCAGTACACGTGGGAGGTGTTCGACCCATGCACCGTCATCACCATCGGCGTCTTTGACAACTGCCACCTCGGCACTGGCAACGGCAACAGCGGCGGGCCACCGCCCAAGGACGCGCGCATCGGCAAGATCCGCATCCGCCTCTCCACGCTGGAGACCGACCGCGTGTACACGCACTCGTACCCGCTCATCGTGCTGCAGCCGTCAGGGGTGAAGAAGACGGGCGAGCTCCGCCTCGCCGTGCGCTTCACCTGCCTCTCGCTCATGAACATGGTGCACCTCTACACGCAGCCGCTGCTCCCCAAGATGCACTACCTCCACCCGTTCACCGTCACGCAGCTCGACGCGCTCCGCATGCGCCGGAGCAAGGCCAACTTCTTCCGCGCCGTCTCGCTCTTCTCCGGGGTGGCAGCCGCGGCGCGCTGGTTCAATGACGTGTGCCTGTGGAAGAACGTGGCCACAACCGCGCTCGTGCACGTCCTCCTGCTCATCCTCATCTGGTACCCAGAACTCATCCTCCCCACCGTGTTCCTCTACATGTTCATGATCGGGTTATGGAACTACCGCCGGCGGCCGCGCCACCCGCCGCACATGGACACGAAGCTCTCGTGGGCCGAGGCGGCGCACCCCGACGAGCTGGACGAGGAGTTCGACACGTTCCCGACGTCCAGGCGGCAGGATATCGTATACATGCGGTACGACCGGCTGCGGAGCGTCGCCGGGAGGATACAGACGGTGGTCGGCGACATGGCCACGCAGGGGGAGCGGCTGCAGTCGCTGCTCAGCTGGCGCGACCCGAGGGCCACGTGCCTCTTCGTCTTCTTCTGCCTCATCGCAGCCATCGTGCTCTACGTGACGCCGTTCCGGGTGGTGGCGCTCGTAGCCGGGCTGTTCTTGCTGCGCCACCCGCGGTTCAGGAGCAGGCTGCCCTCAGTGCCCAGCAACTTCTTTCGCCGGCTGCCGTCGCGCGCGGACAGCATGCTCTGA
Protein Sequence:
- >Oropetium_20150105_17443A|Oropetium_thomaeum|bZIP|Oropetium_20150105_17443A
MMQRPPFRTEEYSLKETSPHLGGTAAGDKLTTTYDLVEQMQYLYVRVVKAKDLPNKDITGSCDPYVEVKLGNYKGTTRHFEKKNNPEWNQVFAFSKERIQSSSVEIVVKDKDFLKDDFVGRVVFDLNEVPKRVPPDSPLAPQWYRLEDRHGHKGKGELMLAVWMGTQADEAFPEAWHSDAASVPGDGLASIRSKVYLTPKLWYLRVNVIEAQDLIPHDRTRFPEVYVKAMLGNQVLRTRSSASRTLNPMWNEDLMFVAAEPFEEHLVLSVENRVAPGKDEVLGRTIISLHHVPRRLDHKLQNSQWFNLEKHVMVDGEQKKETKFSSRIHLRICLEGGYHVLDESTHYSSDLRPTAKPLWKPSIGILELGILTAQGLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVYDPCTVITIGVFDNCHLNGGEKANGARDTRIGKVRIRLSTLETDRVYTHSYPLIVLTPAGVKKTGEVQLAVRFTCSSLLNLMHLYSQPLLPKMHYVHPLSVIQVDNLRRQATNIVSTRLSRAEPPLRKEIVEYMLDVDSHMWSMRKSKANFFRIMGVLSPLIAVARWFDQICHWRNPLTTILIHILFVILVLYPELILPTIFLYLFLIGVWYYRWRPRQPPHVDTRLSHAETAHPDELDEEFDTFPTSRPPDIVRMRYDRLRSVAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVTFCFIAAIVLYVTPFRVVVFLAGLYILRHPRFRHKLPSVPLNFFRRLPARTDSMLRRDPEGYDMPSDLDQALLYFDGHQTKPSIQEQLRDAAGGGKRGGAVASSSEQEGPRTPDPKTLRRLAQNREAARKSRLRKKDQAGTSRTGDTDGKNSVHHMLTQTWGDGVRADAALFNLEYERWLGDHSKVIAQLRAAAEEHRPDGELRAYADEAAAHYGTLMAHKARLAAADPLHLLSGLWKGAAERCLLWIGGFRPSELIKVVLRHVEPLAEQQAAATCEVQDSARRAEEALDGELGSLLRSLSEVVSSDPAQTPPMYGQLYNPADVAGYMGHMHMAIAMDKLAALGTFLRQVNCNSSLSLCHFIVEFSDMRIHAGMLNDGEMMMQADELRMQTLQALRQVLTARQAARCFLKDTNPLLGEQWPKGAAGPARPSGGGGALAGWLGVDKPSSTYDLVEQMFFLYVRVVKAKDLPPNPITGAAMDPYVEVRLGNYKGTTRHFDRRPNPEWDQVFAFSKSRVQSNVLEVFLKDREMIGRDDYVGKVVFDLAEVPTRVPPDSPLAPQWYRLEDRRGDRKVRGELMLAVWIGTQADEAFPEAWHSDAATVRGEGVASVRSKAYVSPKLWYLRVNVIEAQDVQPQSQRGPGGRAPEVFVKAQVGQQILKTSVVPAPTLNPRWNEDLVFVVAEPFEEQLVLAVEDRVSPQKNDLLGRVALPLTLFEKRLDHRPFVQSRWFDLERRVHLRACLEGAYHVMDESTMYISDTRPTARQLWKPPVGVLEVGILGAYGLQPMKNRDGRGATDAYCVAKYGQKWVRTRTMIGTFNPTWNEQYTWEVFDPCTVITIGVFDNCHLGTGNGNSGGPPPKDARIGKIRIRLSTLETDRVYTHSYPLIVLQPSGVKKTGELRLAVRFTCLSLMNMVHLYTQPLLPKMHYLHPFTVTQLDALRMRRSKANFFRAVSLFSGVAAAARWFNDVCLWKNVATTALVHVLLLILIWYPELILPTVFLYMFMIGLWNYRRRPRHPPHMDTKLSWAEAAHPDELDEEFDTFPTSRRQDIVYMRYDRLRSVAGRIQTVVGDMATQGERLQSLLSWRDPRATCLFVFFCLIAAIVLYVTPFRVVALVAGLFLLRHPRFRSRLPSVPSNFFRRLPSRADSML*