Gene Details:

Protein Features:

Annotation Proteins:

  • Refseq:  XP_025809161.1  — uncharacterized protein LOC112887250 isoform X4
  • TrEMBL:  A0A0A9D7B1  — A0A0A9D7B1_ARUDO; Uncharacterized protein

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0015979  — Biological Process — photosynthesis
  • GO:0055114  — Biological Process — oxidation-reduction process
  • GO:0009507  — Cellular Component — chloroplast
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0016491  — Molecular Function — oxidoreductase activity
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >Oropetium_20150105_05092A|Oropetium_thomaeum|bZIP|Oropetium_20150105_05092A
    ATGGCGGAGCCGGCCCTCCTCGACCCCACAGCGTTCGACCTCCGCAACTACCCGGCCCACCTCTTCGACCCGGACCTCCCCATCGCCGGCGGCGACCTCCCGCTGGGCGAATTCTCCGGCGACGGCCTCGACTTCGACCTGCCCGCTGATTTCTGCGTCGACGACTTCCTCCTCCGGTCACCCGACCGCGGCGACAATGACGACAACTCCAGGGAGGCCTCAGCCGACGGATCCGGCCCCGGGACGTCCTCCTCCGCCTCCCCGACCACCTCGGCCGCTAACTCGGCTGTGGTCCACGGTGCGCGCGAGGTGGAGGTGAAACACGAGGACTCTGACGAGGGGAGGAGCGGCCGTGACGTCCCCAGTTGGAGCCTCAAGCGGAAGCAGGCGAGCCCCGAGCTGAGCTCCGATGGGGCCAAGTGCCGCCGATCCGGCGACGGCGAGCTTTCCCCGTCAGCTTCTGCCTCGGCCTCACGGGCCGCCGCGGAGGGCTCGGACGAGAGAGGCGCGGCCTGCGAGGAAGAGGACCCTCGCCGCGCCGCGCGGCTGATGCGGAACCGCGAGAGCGCGCAGCTGTCGCGGCAGAGGAAAAAGCGGTACGTGGAGGAGCTGGAGGATAAGGTGAAGTCGATGCACTCTGTGATAAATGACCTCAATTCTAGGATCTCCTTCGTCATGGCCGAGAACGCCACGCTGAGGCAGCAGCTCGACAGCGGTGGTGGAAGTGGCCCGCCACCTGGGGTGGTGTACCCACCGGCGCCATTGCCTGGCATGTCATTTCCTTGGGTTCCTGGGTATGCAATGCGGCCGCACGGTTCCCATGTCCCGCTTGTGCCAATCCCGCGGTTGAAGCCACAGCAGGTGGCTACTGCACCGAAAGTATCTAAGAGACCGGAAATCAAGAAGGGTGCAGATGGCAAAAGTAAGACTAAGACCAAGAAGGTCGCAGGTGTTAGCCTTCTTGGTTTGCTGTTTGTTGCACTTGTCTTTGGTGCTTTTCTTCCAGGGTTCAATCATAGTTTCGGCATGAGAGGTGTGAGTGACAATGTCGTGTTCAGAGATGTTGGCCGTTCTGAGGCTAGTGTGTTTAGTGTTTCTAACCATGGTAAAGGATCTAAAGCTGGTTTAAACAGTAGTGATGTGAGAAGTACTGATCCTGGAATGATGAAAGGCGAAGCCAATGGAGCTAAACAAAAGCATCCACCTGGACATAACTCTAGTGAGATCTTGGCTGCTTTGTTGTATGTGCCGAGGAATGGAAAACATGTCAAGATCAACGGAAATTTGATTATTCGCTCTGTGATTGCAAGTGAGAAAGCAGTGGCTCACAAGGCCTCAGAAGGTAGTGGTGACCAGTCAGTTAAAGATCGTAAAGAGACAAGTGTTGCCATAGCTCGTTATCTTTCACCAGCTGGAAAGGGTATGAATCAGGAAACGTCCTCGGCAGATGCGCCACTGCCACAGTGGTTTCGTGAAGGAATGGAAGGATCAATTTTGAATTCAGGTATCTGCAGTGAGGTATTCCAGTTTGACATTTCGACAGCTTCTGCCAGTTCTGGTAGCATCATACCTGCCTCTTCAATTGTGAACTCCAGTGCCAATGCTACTCAGAAAATTCCAACGCCTGCTCCTGCTGGTGGCAAGTTGAAAAATAGGAGGATCATGCATAATGAGGCAATTCCGCTCACCGGAAAAACAGTTAATGGCACAGAGCCTCAGTCGTTTAACAGGACTTCTGAAAGCAGCAAGTTACCTAATACTGATAGCAAGCCAACATCATCAGTTGTTGTGTCTGTGCTAGCTGATCCCAGGGAAGCTGTCTTATCTGCACGCGCGAGTACCACCGCCCCATCTGCCATGGCGCTGGCCGCCGCAGCCACCGCCTCGAGCCTCAGGCTCACACCACTCTCCATTCCGCCCCTTGACCTACTACGCGCTAGCCCTAGCCATGGCCTCCTCGCCACGACGACCTCCTTCCCGCGGCCGCGCCGTTGCGGTTGCGGCGCCGTGGTGCGCTGCGCCAAACGCACGGGGAAGCGGCGGTACCCGTCCGAGAAGAAGAGGCTGGAGCGGCGCCACAAGGAGCTGCTCCGCCAGGCCGCCCCCGAGGAGGGCACCGAAGGTCGAGAGTCCGGGTACTGGCGGCTTTCCAAGCTAGCCGTCCCTGCCAGTGACGACCCCGGCAAGGACTTCGCTGGCGTGTCGCCGCCGCTCCTTCAGGCCATCGCTAAAGCCATCAAGTTCCCAGTTGCTTCTATGCTCCCTGAAGAGGCCTTCTCTGTTATCCGCAAGTCATTTGATGCACGAAAGGTTTTGAAAGAACCTCAGTTCGTTTATACTGTTGATATGGATGTTAAGAAGCTTTTGGATATGGAGCCGAGGACATGGGACTTTATTGCTCGGTTGGAGCCCAAACTTGGAGCTGTAGAATACATGCCTGATGAGAGTTTAGCAACTGATCTGATCAGCATAATAAGTGTGAACAAGAAAGGTTCTGACAGTCAGGTAGAAATTAGGGATACTATTAATAATGGTTCGATCCATTGTGCACCAAAGAAGCCAAGAGTGGCAGTTATAGGAAGCGGACCATCTGGGTTGTTTGCTTCCCTGGTACTAGGTGAACTTGGTGCAGAAGTTACCTTATTGGAGCGTGGTCAGCCTGTTGAACAAAGAGGACGTGACATTGGTGCACTAGCAGTTAGACGAATCCTCCAATCTGAAAGCAACTTTTGCTTTGGCGAGGGTGGTGCAGGTACATGGAGTGACGGGAAGCTTGTGACCAGGATAGGAAGAAACACTGATGGTGTTCAGGCTGTTATGAAAACGCTTGTTCAGTTTGGAGCTCCTCCAAACATTTTAGTTGATGGGAAACCTCACTTGGGTACCGATAAACTTGTTCCCCTGCTTCGGAGTTTCAGGCACCACTTAACAGAACTGGGTGTTACCATAAGATTCAATGCTAGAGTAGATGACCTTATAGTTGAAGATGGGCAGGTGAAAGGAATTGTGGTGTCTGATCCAAAAGTGCAGCCTGGTTCTGTGATCCAGAAACTACCATTTGATGCTGTGGTTTTAGCAGTTGGTCACTCAGCTCGTGACACATATAGTATGCTTTGCAAACATAACGTGGATCTGAGCCCAAAAAGTTTTGCTGTTGGCTTAAGAATTGAGCATCCCCAAGAGCTGATAAACAGCATCCAATACTCCGAGCTGGCTGCTGAAGTACAGAAAGGACGTGGGCGCATACCTGTTGCAGATTACAAGATAGTGAAGTCTGTTGGTGACGGACATGTGGAGAATGATGTAAACATAACTGAACAGAGTCGCAGCTGTTACTCGTTTTGCATGTGTCCTGGTGGACAAGTTGTTCTAACGAGTACAAATCCATTGGAATTGTGTATCAATGGCATGTCTTTCTCACGACGTGCATCAAAGTGGGCAAACTCGGCTCTTGTTGTCACTGTATCATCTCAAGATTTTGAATCATTTAAATCCCATGGTCCTCTTGCAGGTGTTGAATTCCAGAGAGAATTTGAAAGAAGAGCAGCTGTGATGGGTGGTGGAAATTTTGTTGTACCTGCACAGTGTGTCACAGATTTTATCAGCAACAAATTATCAGTTACATCTCTCCCACCATCAAGCTACAGGTTAGGAGTTCGACCATCCAAACTTCACGAGCTATTCCCTCCCTACATAACTGAAGCTTTACAGCAATCAATAATAATGATCGAACAAGAGATGCCAGGGTTTGTTTCTAAGGAGGCACTACTTCATGGTGTGGAGGTATTCAAATTATTATGCAATAGATTATTTACTTCTAAGATATCATATGAAGCACTTGAATTTCTAAACGTGAGGTAG
Protein Sequence:
  • >Oropetium_20150105_05092A|Oropetium_thomaeum|bZIP|Oropetium_20150105_05092A
    MAEPALLDPTAFDLRNYPAHLFDPDLPIAGGDLPLGEFSGDGLDFDLPADFCVDDFLLRSPDRGDNDDNSREASADGSGPGTSSSASPTTSAANSAVVHGAREVEVKHEDSDEGRSGRDVPSWSLKRKQASPELSSDGAKCRRSGDGELSPSASASASRAAAEGSDERGAACEEEDPRRAARLMRNRESAQLSRQRKKRYVEELEDKVKSMHSVINDLNSRISFVMAENATLRQQLDSGGGSGPPPGVVYPPAPLPGMSFPWVPGYAMRPHGSHVPLVPIPRLKPQQVATAPKVSKRPEIKKGADGKSKTKTKKVAGVSLLGLLFVALVFGAFLPGFNHSFGMRGVSDNVVFRDVGRSEASVFSVSNHGKGSKAGLNSSDVRSTDPGMMKGEANGAKQKHPPGHNSSEILAALLYVPRNGKHVKINGNLIIRSVIASEKAVAHKASEGSGDQSVKDRKETSVAIARYLSPAGKGMNQETSSADAPLPQWFREGMEGSILNSGICSEVFQFDISTASASSGSIIPASSIVNSSANATQKIPTPAPAGGKLKNRRIMHNEAIPLTGKTVNGTEPQSFNRTSESSKLPNTDSKPTSSVVVSVLADPREAVLSARASTTAPSAMALAAAATASSLRLTPLSIPPLDLLRASPSHGLLATTTSFPRPRRCGCGAVVRCAKRTGKRRYPSEKKRLERRHKELLRQAAPEEGTEGRESGYWRLSKLAVPASDDPGKDFAGVSPPLLQAIAKAIKFPVASMLPEEAFSVIRKSFDARKVLKEPQFVYTVDMDVKKLLDMEPRTWDFIARLEPKLGAVEYMPDESLATDLISIISVNKKGSDSQVEIRDTINNGSIHCAPKKPRVAVIGSGPSGLFASLVLGELGAEVTLLERGQPVEQRGRDIGALAVRRILQSESNFCFGEGGAGTWSDGKLVTRIGRNTDGVQAVMKTLVQFGAPPNILVDGKPHLGTDKLVPLLRSFRHHLTELGVTIRFNARVDDLIVEDGQVKGIVVSDPKVQPGSVIQKLPFDAVVLAVGHSARDTYSMLCKHNVDLSPKSFAVGLRIEHPQELINSIQYSELAAEVQKGRGRIPVADYKIVKSVGDGHVENDVNITEQSRSCYSFCMCPGGQVVLTSTNPLELCINGMSFSRRASKWANSALVVTVSSQDFESFKSHGPLAGVEFQREFERRAAVMGGGNFVVPAQCVTDFISNKLSVTSLPPSSYRLGVRPSKLHELFPPYITEALQQSIIMIEQEMPGFVSKEALLHGVEVFKLLCNRLFTSKISYEALEFLNVR*