Information report for NNU_010442-RA
Gene Details
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Functional Annotation
- Refseq: XP_010261552.1 — PREDICTED: bZIP transcription factor 16 isoform X1
- Refseq: XP_010261553.1 — PREDICTED: bZIP transcription factor 16 isoform X1
- Refseq: XP_010261554.1 — PREDICTED: bZIP transcription factor 16 isoform X1
- Refseq: XP_010261555.1 — PREDICTED: bZIP transcription factor 16 isoform X1
- Refseq: XP_019053816.1 — PREDICTED: bZIP transcription factor 16 isoform X1
- Swissprot: Q501B2 — BZP16_ARATH; bZIP transcription factor 16
- TrEMBL: A0A1U8A563 — A0A1U8A563_NELNU; bZIP transcription factor 16 isoform X1
- STRING: XP_010261549.1 — (Nelumbo nucifera)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_12353
- Citrus sinensis: orange1.1g036551m
- Fragaria vesca: mrna13716.1-v1.0-hybrid
- Glycine max: Glyma.09G208500.2.p, Glyma.09G208500.1.p
- Gossypium arboreum: Cotton_A_09739_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A08G1385
- Juglans regia: WALNUT_00014592-RA
- Malus domestica: MDP0000286846
- Manihot esculenta: Manes.15G192000.1.p
- Populus trichocarpa: Potri.003G097600.1
- Prunus mume: XP_008238155.1
- Prunus persica: Prupe.5G027000.1.p
- Pyrus bretschneideri: Pbr037165.1, Pbr016302.1, Pbr002338.1
- Ricinus communis: 30068.m002661
Sequences
CDS Sequence:
- >NNU_010442-RA|Nelumbo_nucifera|bZIP|NNU_010442-RA
ATGGGGAGCAGTGAGATGGATTCATCGTCAAAGGCGCCAAAGACGCCTACAACGCAGGAGCAGCCTTCTGCCACTACCACTGCCGCGGTTTATCCCGAGTGGGCTGGATTTCAGGCATATTCGCCTCTTCCTCCACATGGCTTCTTTCATTCTTCGGTTGCATCTAGTCCCCAGGCTCACCCGTACATGTGGGGAGCTCAGCACCTTATGCCTCCATATGGGACCCCACCACCTCCATATGTTGCAATGTATCCCCATGGCGGGTTATATGCTCATCCATCCATTCCTCCGGGTTCTCATCCATTTGCTCCTTATGCAATGCCTTCTCCAAATGGCAATGCTGATGCTTCTGGAACTGCCCCTGGTGGGGCAGAGGCTGATGGTAAGTCTTCAGATGGTAAGGAAAGAAGTTCACTCAAAAGATCAAAGGAAAGTTTAGGGAGTTTGAATGTGATTACAGGAAAGAACAATGATCTAAGTAAAACAGCAGGAGCATCTGCAAATGGGGTCTTTTCCCAAAGTGCTGAGAGTGCAAGTGATGGTTCAAGTGAAGGAAGTGATGCCAACTCTCAGAATGTATGTATCAGTAAGCTTTGGCTTTTTTATTCTGCATGCTTGTTTTCTCTTGATGGTCAGGATTCACAACAGAAAGCCAGTGAGCAAGATTCTATGGAAGGGGTCACAGGTGAGGCATCTCAGAATGGCAATGCAGCACGTGGTCCTCTCAATGGAGTACCTCGTACTCCACCAAGTGCAATGTTAAATCCAGCAGTGGCCATAATGCCAATACCAGCAGGAGCACCTGGAATGGTTGCTGGTCCGGCTACAAACTTAAATATTGGAATGGACTACTGGGGTGCCCCAACATCTTCTATCCCTGTACTACGTGGAAAGGTCCCTTCTGCACCAGTTGCAGGAGGAATGGTGCCAACTGTTGTTGGATCCCGTGAGGGTGTGCAATCAGAGCTTTGGATGCAGGACGAAAGGGAACTGAAAAGGCAGCGAAGAAAGCAGTCAAATAGGGAATCAGCCCGTCGATCCAGGTTGCGTAAGCAGGCGGAATGTGAAGAGCTAGCCCAAAGAGTTGAAATTCTAAGTGAGGAGAACTCCACACTTAGATCAGAAGTCACTCGTATCAGGAGCGAGTATGAGCAGCTTCTCTCTCAGAATGCTTCTCTGAAGGAGAGGCTTGGTGAAACTCCCAAAGGACAAGAAGATTCAAGAACTGGCAAGAATGACCAACATTCAGGCAATGATAATCAACAAGCAGTCGAAACAGAGCTTGTACAGAGTGGTCACTAA
Protein Sequence:
- >NNU_010442-RA|Nelumbo_nucifera|bZIP|NNU_010442-RA
MGSSEMDSSSKAPKTPTTQEQPSATTTAAVYPEWAGFQAYSPLPPHGFFHSSVASSPQAHPYMWGAQHLMPPYGTPPPPYVAMYPHGGLYAHPSIPPGSHPFAPYAMPSPNGNADASGTAPGGAEADGKSSDGKERSSLKRSKESLGSLNVITGKNNDLSKTAGASANGVFSQSAESASDGSSEGSDANSQNVCISKLWLFYSACLFSLDGQDSQQKASEQDSMEGVTGEASQNGNAARGPLNGVPRTPPSAMLNPAVAIMPIPAGAPGMVAGPATNLNIGMDYWGAPTSSIPVLRGKVPSAPVAGGMVPTVVGSREGVQSELWMQDERELKRQRRKQSNRESARRSRLRKQAECEELAQRVEILSEENSTLRSEVTRIRSEYEQLLSQNASLKERLGETPKGQEDSRTGKNDQHSGNDNQQAVETELVQSGH