Information report for mrna30280.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_011466768.1 — PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 isoform X2
- Refseq: XP_011466769.1 — PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 isoform X2
- Swissprot: Q9SJN0 — ABI5_ARATH; Protein ABSCISIC ACID-INSENSITIVE 5
- TrEMBL: A0A2P6RBR3 — A0A2P6RBR3_ROSCH; Putative transcription factor bZIP family
- STRING: XP_004305345.1 — (Fragaria vesca)
- GO:0009409 — Biological Process — response to cold
- GO:0009414 — Biological Process — response to water deprivation
- GO:0009651 — Biological Process — response to salt stress
- GO:0009737 — Biological Process — response to abscisic acid
- GO:0009739 — Biological Process — response to gibberellin
- GO:0010152 — Biological Process — pollen maturation
- GO:0010187 — Biological Process — negative regulation of seed germination
- GO:0010200 — Biological Process — response to chitin
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0048316 — Biological Process — seed development
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >mrna30280.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna30280.1-v1.0-hybrid
ATGGGTGGTGTCTCGGAGTCTGAAACGATGTCCCACAGCAGGGAGGAATCACCATTGCAGTCTGACCAACATGCCAAGAACAACCAACTATTCACGTCCTTAGGAAGAGAGTCTTCCATCTACTCTCTCACTCTCGACGAGTTCCAGCACACCCTCTGTGAGAACGGCAAGAATTTCGGGTCTATGAACATGGATGAGTTCCTCAACAGCATTTGGACTGCTGAAGAAAATCAAGCCATCAACTCCACCCACCACAACAACAATAATAACCTCAATGCCAACCACATCAACAATATAAGCAGCAGCAATGTCCAGCACCACGCTTCGAGCGAGGTCTCTACGGAAAAAAAGGGTATGATTGCCAGGCAACCAAGCTTGGCACGTCAGGGTTCACTCACCCTGCCTGCGCCATTGTGTAGGAAGACAGTGGATGAAGTTTGGTCTGAAATACACAGGGGTCAGAAAGCACAAGCTCAGCAACTAAACAATAACCACAATGATAGCAATGATGGTGCTCAGAATTCCGAGTATGCTGCTCGCCAGCCCACATTTGGGGAGATGACATTGGAGGATTTTCTGGTAAAAGCAGGGGTAGTTCGGGAACCAGATTCAATGTCAGTGGCTCCCCTCCCGCCCCAACCCCAACAGCAACCACAGCAGTATGGCGTAGTGGGACAAAGTTTTATGATGGGAATGGGTGCAAATGCTGGTGCTAGCACTAGTACTACTCCTGTTCTTCCCAATTATCAAACTATCCCTCAAGGTGGAGCCCCGGTGGGAGAGTCACCCGGGTATGCTACAAATGGCAAGAGGAATGGGGTATACCTGCCGCCACCGTCACAGGCAGTTTGTTTTGGTGGGAGAATGGTGAACGGTGGCGGTGGTTATGCCCCAACACAGCCAATTGGGATGGCTGCTCCTCTGAGTCCAGTGTCATCAGATGGGATGTGTGCGAGTCAGATTGAGAACTCAGGGGGCCAACATGGTATGGGTATGGGTGCACTGAGGGGAAGAAAGAGAATTATAGATGGTCCAGTGGAGAAGGTGGTGGAGAGGAGGCAGAGAAGGATGATTAAGAATAGAGAGTCTGCTGCAAGGTCTAGAGCCAGGAAACAGGCATACACTGTCGAGTTGGAGGCAGAACTGAACCAGTTAAGAGAAGAAAATGCAAACCTTAAACAGGCACTGACTGAGCTTGAGATGAAACGAAAGCAACAGCACTGTGAGGAAATGAGAAAAAGAGTTCAGAGCAGGGCGCAGAAAGCTATGGAGAAGCTGTGGATGCTGAAGAGGAGTCACAGTTGTGCTGTGTGA
Protein Sequence:
- >mrna30280.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna30280.1-v1.0-hybrid
MGGVSESETMSHSREESPLQSDQHAKNNQLFTSLGRESSIYSLTLDEFQHTLCENGKNFGSMNMDEFLNSIWTAEENQAINSTHHNNNNNLNANHINNISSSNVQHHASSEVSTEKKGMIARQPSLARQGSLTLPAPLCRKTVDEVWSEIHRGQKAQAQQLNNNHNDSNDGAQNSEYAARQPTFGEMTLEDFLVKAGVVREPDSMSVAPLPPQPQQQPQQYGVVGQSFMMGMGANAGASTSTTPVLPNYQTIPQGGAPVGESPGYATNGKRNGVYLPPPSQAVCFGGRMVNGGGGYAPTQPIGMAAPLSPVSSDGMCASQIENSGGQHGMGMGALRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENANLKQALTELEMKRKQQHCEEMRKRVQSRAQKAMEKLWMLKRSHSCAV*