Information report for mrna27194.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_011460752.1 — PREDICTED: homogentisate 1,2-dioxygenase
- Swissprot: Q9ZRA2 — HGD_ARATH; Homogentisate 1,2-dioxygenase
- TrEMBL: A0A2P6QAB8 — A0A2P6QAB8_ROSCH; Putative homogentisate 1,2-dioxygenase
- STRING: EMJ15072 — (Prunus persica)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0006559 — Biological Process — L-phenylalanine catabolic process
- GO:0006572 — Biological Process — tyrosine catabolic process
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:1902000 — Biological Process — homogentisate catabolic process
- GO:0005829 — Cellular Component — cytosol
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0004411 — Molecular Function — homogentisate 1,2-dioxygenase activity
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g037696m
- Gossypium arboreum: Cotton_A_20105_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A01G0419, Gh_D01G0423
- Juglans regia: WALNUT_00000561-RA, WALNUT_00001891-RA
- Malus domestica: MDP0000133698
- Petunia inflata: Peinf101Scf01267g04038.1
- Prunus mume: XP_008226449.1, XP_008226448.1
- Prunus persica: Prupe.4G172000.2.p, Prupe.4G172000.1.p
- Pyrus bretschneideri: Pbr038249.1, Pbr026741.1
- Sesamum indicum: XP_011082729.1
- Vitis vinifera: GSVIVT01014246001
- Ziziphus jujuba: XP_015899153.1
Sequences
CDS Sequence:
- >mrna27194.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna27194.1-v1.0-hybrid
ATGGACCAGCCACCGATCACCGCCAAAACCTCCGGCTCCGATTCCCTCTCCTCCGCCGTCGACCTCCCTTACCAGTCCGGCTTCCACAACCACTTCTCCTCCGAAGCTCTCCCCGGCGCTCTCCCCTCCGGCCAGAGCAGCCCCCTCCTCTGCCCCTACGGCCTCTACGCCGAGCAAATCTCCGGCACCTCCTTCACCTCGCCGCGCAAGCTCAACCTCCGCTCCTGGCTCTACCGGATCAAGCCTTCCGTCACTCACGAGCCTTTCAAGCCGCTCCGGCCCAGCCACGGCCGGCTCGTCAGCGAGTTCAACGACTCCAACAGCTTCACCACGCCGACTCAGCTGCGGTGGAAGCCGGTGGATGTTCCGGAGACGCCGACGGACTTTGTGCAGGGGTTGTACACTGTGTGCGGCGCTGGGAGCTCGTTCCTCCGCCATGGCTTTGCTATTCACATGTACACTGCGAACAAGTCGATGGATGATCGTGCCTTTTGCAATGCTGATGGAGATTTCTTGATAGTCCCTCAATTAGGGAGGCTTTGGATCACTACAGAGTGCGGAAAATTGAATGTTTCTCCTGGTGAAGTTGCTGTATTACCTCAAGGATTTCGATTTGCAGTAGACCTTCCTGATGGCCCGTCACGAGGTTATGTAGCTGAAGTTTTTGGCACCCATTTTCAACTCCCTGAACTTGGCCCAATAGGAGCTAATGGCCTAGCTGCTCCAAGGGATTTTCTTGTTCCCACTGCATGGTTTGAGGAAAGTACCCGTCCAGGCTACATTATTATACAAAAATATGGTGGAGAACTTTTTACTGCAAAGCAGGATTTCTCTCCATTCAATGTGGTTGCTTGGCATGGTAATTATGCTCCATATAAGTATGATCTGACCAAGTTCTGCCCATTCAACACGGTCTTGTTTGATCATGGTGACCCTTCAGTAAATACAGTATTGACAGCACCAACTGATAAACCTGGTGTTGCATTGCTCGATTTCGCCATATTTCCTCCTCGATGGTTGGTTGCTGAACATACATTTCGACCTCCATACTACCACCGGAATTGTATGAGTGAATTCATGGGCCTCATTTACGGTGGATATGAGGCAAAAGCAGATGGGTTTCTTCCAGGTGGTGCAAGCCTCCATAGCTGTATGACTCCCCATGGTCCTGATACAAAGACATATGAGGCTACAATTGCACGTGGGAATGATGTAGGACCACATAAAATAAGTGATACTATGGCTTTTATGTTTGAATCGTGTTTAGTCCCCCGAATTTGCTCATGGGCTCTTGAGTCTCCCCTCATAGATCATGACTATTACCAGTGCTGGATTGGACTAAGATCACACTTCACAGGCACAAAGGCAGATGCTAAAGATGGAAATATCCAGAATGACTTTCCAGCTTCTCCTTCTTCTTCTTCCTCCCTTCACCCTCACCTCCCTCCCCAGCTGTTGCTAGCTGTCTCGAGCTCCCCCTCCCCCCATCATGACTCAGAATTGGGCGCCCTTCCCCCACCACAGAATAATGCCCTCCATGGCCAACTTTCTCCCCTCCTCCACCGCCGCCCTCAACCACCCCCTTCTTCTCCTCCTCCCCCTCAGCAGCAGTCTTCTTCCTGCTGGATGGACGAGTTCCTTGACTTCTCCTCCGCCCGGCGCGGGGCGCACCGCCGCTCCGCCAGCGACTCCATTGCGTTCCTCGAGTCGCCGCTTAACGTGCTCGACGACGTCGACCATAGGAACCCCACCGTCCACGGCGCCAACAACATTGCAGGATCGTTCGATCGACTCGACGACGAGCAGCTCATGTCCATGTTCTCCGACGACATCGCCGTCCCTCCCACCGTCACGTCGTCCTCGAACCCTTCCTCGCCGTCCGACCAGAACAGCAACAACGACGAGATTATGAACACCAACAATAGTAACGGCAACAACGACGAGAATTTTAACAATATTAACGGCCACAGTGTTAATCACCGGCCGTTGATGCAGCTCAGGATCGACGGCCACCAGCAGCCGAAGAGCGAGCCCGGCGAGGTTGATAGCTCCTGCGATCCCAACGACCCGCATTCTCAGTCCCCCCGCGCGCCACCGCCGACTTCCCCTGCCGATCCCAAGAGGGTAAAAAGAATCTTGGCAAATCGGCAATCGGCGCAGAGGTCCAGAGTGAGAAAGCTACAGTACATATCGGAGCTCGAACGCAGCGTCACATCATTACAGTCGGAGGTGTCGGCGCTTTCACCCAGGGTTGCATTTCTAGATCACCAGAGGTTGATTCTCAATGTGGATAACAGTGCTCTCAAGCAAAGGATTGCTGCTTTGGCGCAAGATAAGCTCTTCAAAGATGCTCATCAAGAGGCATTGAAGAAGGAAATAGAGAGATTAAGGCAGGTTTATCACCACCAAACCCTAAAGAAGATGGAGAACAACAGCAATAATAACAACCAAAACACCGCCGCAGCTCCACCGCAACATCATCACAACGCGGCGGACATCATGCTCTGTACGGATCACAATAAGGAGCAGCAGCAGATTCTAAATTGA
Protein Sequence:
- >mrna27194.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna27194.1-v1.0-hybrid
MDQPPITAKTSGSDSLSSAVDLPYQSGFHNHFSSEALPGALPSGQSSPLLCPYGLYAEQISGTSFTSPRKLNLRSWLYRIKPSVTHEPFKPLRPSHGRLVSEFNDSNSFTTPTQLRWKPVDVPETPTDFVQGLYTVCGAGSSFLRHGFAIHMYTANKSMDDRAFCNADGDFLIVPQLGRLWITTECGKLNVSPGEVAVLPQGFRFAVDLPDGPSRGYVAEVFGTHFQLPELGPIGANGLAAPRDFLVPTAWFEESTRPGYIIIQKYGGELFTAKQDFSPFNVVAWHGNYAPYKYDLTKFCPFNTVLFDHGDPSVNTVLTAPTDKPGVALLDFAIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGNDVGPHKISDTMAFMFESCLVPRICSWALESPLIDHDYYQCWIGLRSHFTGTKADAKDGNIQNDFPASPSSSSSLHPHLPPQLLLAVSSSPSPHHDSELGALPPPQNNALHGQLSPLLHRRPQPPPSSPPPPQQQSSSCWMDEFLDFSSARRGAHRRSASDSIAFLESPLNVLDDVDHRNPTVHGANNIAGSFDRLDDEQLMSMFSDDIAVPPTVTSSSNPSSPSDQNSNNDEIMNTNNSNGNNDENFNNINGHSVNHRPLMQLRIDGHQQPKSEPGEVDSSCDPNDPHSQSPRAPPPTSPADPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQSEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKLFKDAHQEALKKEIERLRQVYHHQTLKKMENNSNNNNQNTAAAPPQHHHNAADIMLCTDHNKEQQQILN*