Information report for mrna09110.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004291101.1 — PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
- Refseq: XP_011458927.1 — PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
- Swissprot: Q9M7Q4 — AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
- TrEMBL: A0A2D1UXF0 — A0A2D1UXF0_ROSHC; ABRE binding factor
- TrEMBL: A0A2P6Q0K4 — A0A2P6Q0K4_ROSCH; Putative transcription factor bZIP family
- STRING: XP_004291101.1 — (Fragaria vesca)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn131571
- Cucumis melo: MELO3C010850P1
- Gossypium hirsutum: Gh_D05G1946, Gh_A05G1751
- Malus domestica: MDP0000296303, MDP0000701734
- Manihot esculenta: Manes.18G037900.2.p, Manes.18G037900.1.p
- Petunia inflata: Peinf101Scf01046g09007.1, Peinf101Scf00167g06015.1
- Prunus mume: XP_008220233.1
- Prunus persica: Prupe.1G434500.1.p
- Sesamum indicum: XP_011074427.1, XP_011074426.1
- Ziziphus jujuba: XP_015884346.1, XP_015884345.1, XP_015884344.1
Sequences
CDS Sequence:
- >mrna09110.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna09110.1-v1.0-hybrid
ATGGGTGCCAATATGAATTTCAAAGGGTTCATGACGGACTTCCAAGGCGACGGCGGAGGCCGGCCACCGGGAATCAACAACAACAACAACAGCAACGCCTTAGCGCGGGAGGCGTCGATCTACTCCCTCACGTTCGACGAGTTGCAGAACAGCATGGGTGGACCAGGTAAAGATTTTGGGTCTATGAACATGGATGAGCTGTTAAAGAGTATCTGGAGCGCGGAGGAGACTCAGACTATGGTCCCTAGTGGTGTGGTGACCGGAGGTCAAGATGGGTATAGTCAGGGGCACCTGCCTCTGCAGAGGCAGGGGTCGTTGACGCTGCCTCGGACGCTGAGCCAGAAGACGGTGGATGAGGTGTGGAGGAATCTTTCGGCTAAGGAAGAAAATGGCGGCACCGCCGGGCCGAAGGCGCCGCAGAGGCAGCAGACTTTGGGGGAGATGACGTTGGAGGAGTTCTTGGTAAGAGCTGGAGTTGTGAGAGAAGATGGTCAAGTTGGTTCTAAGCTAGGTGGCAGCGGGTTTTTCGGGGAGTTGGCTCGGTTTGGGAACGGTGGTGGTGGTGGTGTAGGATTCGGGTTTCAGCAGCCGGATCGTGGTAGTGTGGGGGTTATGGGGAGTAGGATTTCGGAGAATGGCAATCAAATTGGGAATTTAAATTCAAATATGCCGCTGAATGCTAATGGTGTTAGATCAAGTCAGCAACAGCAACAGGCACCGCAGCAGCAGCCGCAGCAGCTGCAAATATTCCCCAAGCAGCAGCCTGTGACTTACAGTACTTCACAGATGGCTCTGGGGCCGAATTCGCAGTTAGGGAGTCCGGGAATGAGGGGTGGGATTATGGGGATCGGCGAGCAGGGTATAAATAATGCTCTGGTTCAGAGTCCAGTGCTGCAAGGAGGAGGAGGAGGAGGGATGGGGATGGTTGGACTAGGAGCTGGCAATGGTCGAGTGGCTGCAGTGTCTCCGGCGAATCAGCTGTCGTCAGATGGGATTGGAAATGGGAAGAGTAATGGGACTGATACGTCGTCGGTTTCACCAATGCCTTATGTGTTTAACAATGGTTTTAGGGGAAGGAAAGGCGGGCCTGTGGAGAAAGTTGTTGAGAGGAGACAGAGGAGGATGATCAAGAACAGAGAGTCGGCTGCCAGATCAAGAGCTCGCAAACAGGCTTACACAATGGAGTTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAGGAGTTGAAGAAGAAACAGGATGAAATGATGGAACTGCAGAAGAATCAGTTGATTGACCATCTGGAATTTGTTAACTTCGCAGGATATAGAGATTCAAAATCTTCAAAGAGGAGGCAAGAGACGTTGCTTGAGACGAACACAGACCGGTCCATGGTAAAGTGCAGAGCTTGGGGATCGGGGTTACATTGTGGGAAAGGTGGTGGCTGTACATATTTAAGGATCATGTGTCTTGTGCTGTAG
Protein Sequence:
- >mrna09110.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna09110.1-v1.0-hybrid
MGANMNFKGFMTDFQGDGGGRPPGINNNNNSNALAREASIYSLTFDELQNSMGGPGKDFGSMNMDELLKSIWSAEETQTMVPSGVVTGGQDGYSQGHLPLQRQGSLTLPRTLSQKTVDEVWRNLSAKEENGGTAGPKAPQRQQTLGEMTLEEFLVRAGVVREDGQVGSKLGGSGFFGELARFGNGGGGGVGFGFQQPDRGSVGVMGSRISENGNQIGNLNSNMPLNANGVRSSQQQQQAPQQQPQQLQIFPKQQPVTYSTSQMALGPNSQLGSPGMRGGIMGIGEQGINNALVQSPVLQGGGGGGMGMVGLGAGNGRVAAVSPANQLSSDGIGNGKSNGTDTSSVSPMPYVFNNGFRGRKGGPVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELKKKQDEMMELQKNQLIDHLEFVNFAGYRDSKSSKRRQETLLETNTDRSMVKCRAWGSGLHCGKGGGCTYLRIMCLVL*