Information report for mrna03778.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Gossypium hirsutum: Gohir.A12G169200
- Malus domestica: MDP0000250967, MDP0000301884, MDP0000145555
- Populus trichocarpa: Potri.008G118300.1, POPTR_008G118300v3
- Prunus avium: Pav_sc0000567.1_g900.1.mk
- Prunus mume: XP_008243193.1
- Prunus persica: Prupe.1G307300.2.p, Prupe.1G307300.1.p, PRUPE_1G307300, Prupe.1G307300.5.p, Prupe.1G307300.4.p, Prupe.1G307300.3.p
- Rosa chinensis: RchiOBHm_Chr4g0435611
- Ziziphus jujuba: XP_015895683.1, XP_015895682.1
Sequences
CDS Sequence:
- >mrna03778.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna03778.1-v1.0-hybrid
ATGAACAACGTCTCTCACAGCTCCTCCTCTTCCTCGTCCGTCAACTCCGCCTCCATTTCCGCCTCCGATCCGAATGTGGGCCGGAGCCGGAGTGGCGACGGCAGCCAAACCATGGCGGCGGAGCCGTCACGGCGGTGGCGTGATGTGTTCTGGTTGGGGATATTTATGATTCATTTGATTTTAGTGGGAGGTGCTCTGGCGGTTTTGGGTCTCAATAGGTTTAAGAAATCGGATAGGCTGAACTTGGATCAGTACACAAAGAATTACTTGGAAAATCAGAAAGGATTTACTGAGGATTATTGGCCGCTTTATGCTCTTGCTGGTGGAGTTGGGACTGTTCTTGGTTGGACTTGGTTGTTGTTCCTTGGATCTCAGGCGAGTCATATGATGAAGATTGCGGTGCATATCTTGACGACTTATCTTGCTGTGCTCAGTGTTCTGTGTTTTTGGATGGAGCAGTTCTTCTGGGGAGTTGCATTTGCGATCGGCGCTGGGTTGTTGTTCTTGTATGTGTTGGCAGTCATAGACAGACTACCCTTTACCATGCTGGTGCTACAAGCAGCTGTCAAGATGGTATGGAGTCTACCTGAAGTTATGAGAGTAGCATATGCATTCATGCTTATTATGCTTTTATGGATGGGAATATGGTCCTTTGGGGCTGCTGGTGTTGTGGCTTTAGGCATTGGAGATGGTGGACGCTGGTGGCTTCTTGTGGTTCTCTCTGTAAGCTTATTTTGGACGGGTGCTGTTCTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTTCCCATGGTGGTCGCGAGGCCTCATCAATACCTTCAAAGTCACTAATGAAGTCTCTTCGGTATGCAGTCACAACTTCTTTTGGCAGCATCTGCTACGGTTCACTCTTCACAGCTGCCATTCGATCTTTGCGCTGGAAGATCAGGGGAGTTCGGTCCAAGATTGGTAACAATGAGTGTCTACTTTGCTGTGTCGATTTCCTCTTTCATCTTGTGGAGACACTTGTGCGATTCTTTAACAAGTATGCCTATGTTCAGATAGCTGTTTCTGGCAAAAGTTTCAATCATTCAGCGAGGGATGCTTGGGAGTTATTTCAGTCTACTGGAGTCGAGGCCCTCATTGCCTATGATTGCTCAGGTGCTGTATTATTGATGGGCACACTCTTGGGTGGGCTTATTACCGGAACTTGCTCAGGCGTCTGGACATGGGTTAAATATAGGGACAGAGTGGCCATGGTTGGTTCCACTGCAATGTTGATGGGAATGATCTTGGTGGGGATAGCAATGGTGGTTGTGGAAAGTGCTGTTACATCTATCTATATTTGTTATGCAGAAGACCCGTTATTAATTCATAGGTGGGATCCCGAATTCTTCAACCAGATGTCGGAGATGCTTCACCAGCGTCTTCAACACAGGAGTGCCCGGGCAAGGGAAGTGTTAACCCACAATCGGGCAGCGCTGCAATTGCGGTCTGAGTTGAGCAAAGAAGTTGGTCAATCAGGTTCGAAGCAAACTTCAGAAGCTCAGAGCTCTTGCAGGTACAGATCCTACACTCAGACTAAGCTAGAGATGGAAAACAGGAAAAGGCTTTGTGATGATGGTGATGATGGGCAAGGTGACCATGGTAAAAGTCACGTGAGGCCATTTCTCTGCTTGCATCATCACCAAGATCTCTCTTTCTCTGTGTCTCTCACACAGACACCAAACAAGGCACGAGCTGTAAATGCAATGCTGCCAATGGAGTCTGCCACACGCAGAAGCAGAGGCGCAGAAGCAGAACCAACAGTAAATAAGCCGCTGAGTGTTGGTGCTGTGAAACTGCTTTGCCATTACCAAGAGAGTCATTGTTGGTACTTGTCTTTTCCATTTTCAATCTGGGTTCCGCTGGTTATTTTCAGCAGTGTGAAATGGGCGACAGCGGAGAGTGAGAGAGACGCTCCAGGGGGAGAGAACGGGGGAGGAGGGATAGAATTTTGGCGGGGAGGAGATGACACCCAAACGCGTTTTGCGGATCTTGGAGAGCTTGATCATTCCGCTACTGTGTTTCCTCACGATGATGCTCTTGATTTAAGCCCAAGCTCTATCTTCAGCTTAAAAGCAAACAACAACAACGTTGCTGTTGTACCTAATGCTTTCCACTATGCGACCTTGAACACGAGCCCGGGGTGTTTGGACATAGGCTCAACCTTGTCCGGAGAGCAGCAGTACATGTACCAACATCACAAGGGAACGACGTCGTCTGGAAACAACGGCCACTTTGAGAACTGGGGTGACTCGGCTATGGCGGAGCACAGTCAGCAGACTGACACCTCCACAGATATCGACACTGAAGACAAAAACCATGTAAACTCTTTTGCTCTCGTCCCTCTTCGTGGAGCTCAGCATGGAGCACTAGTAGTAGTGGATTCCAATTCCATAGAGCAGGCCAATGGAAGAACTGGTGACCAAAAGGCACTTCGTCGGTTGGCTCAGAATCGAGAAGCAGCAAGGAAGAGTCGACTTAGGAAGAAAGCATATGTCCAGCAGCTGGAGAATAGTAGACTCAAGCTTTCGCAACTTGAGCAAGAGCTTCAACGAGCACGCCAGCAGGGTGTGTTTGTTGGACTTTCAGGGGATCAGGGTCATTCTGTGGCGGGAACTGGGGCCTTAACATTCGACTTTGAGTATGCACGCTGGCTTGATGAACATCAGCATCTAATACATGAGCTGCGATCGGCTGTGAATTCTCATCTGGTAGATAATGGATTGCGAATTCATGTTGATAGTGTTATGACACACTATGATGAGATATTCAGGTTAAAGAGTGTTGCTGTCAAGGCTGATGTATTCCACATGCTTTCTGGCATGTGGAAGACACCTGCTGAAAGGTGTTTTATGTGGTTGGGAGGATTCCGCTCCTCTGAACTTCTCAAGATACTTGGGAATCAACTTGAGCCTTTAACAGATCAGCAGTTGATGGGAATATGCAATCTACAGCAATCTTCTCAACAGACTGAAGATGCCTTATCACAAGGGATGGAAGCTTTGCAACAATCGCTTGTCGACACACTCTCCTCAACCAGTAATGGCTCTACTGGTTCAGATGTTGCCGATTACATGGGCCAAATGGCAATTGCTATGGGCAAGCTTGCCACACTGCAGAACTTCATTATCCAGGCTGACCTATTAAGACAGCAAACTCTGCAACAATTGTATCGGATTCTGACCACTCGGCAAGCTGCTCGTGCCCTTCTTGTTATCAACGATTACTTCTCGCGTCTCCGAGCACTTAGTTCTTTGTGGATGGCCCGTCCTAGGGACTAA
Protein Sequence:
- >mrna03778.1-v1.0-hybrid|Fragaria_vesca|bZIP|mrna03778.1-v1.0-hybrid
MNNVSHSSSSSSSVNSASISASDPNVGRSRSGDGSQTMAAEPSRRWRDVFWLGIFMIHLILVGGALAVLGLNRFKKSDRLNLDQYTKNYLENQKGFTEDYWPLYALAGGVGTVLGWTWLLFLGSQASHMMKIAVHILTTYLAVLSVLCFWMEQFFWGVAFAIGAGLLFLYVLAVIDRLPFTMLVLQAAVKMVWSLPEVMRVAYAFMLIMLLWMGIWSFGAAGVVALGIGDGGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFLVLSHGGREASSIPSKSLMKSLRYAVTTSFGSICYGSLFTAAIRSLRWKIRGVRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVSGKSFNHSARDAWELFQSTGVEALIAYDCSGAVLLMGTLLGGLITGTCSGVWTWVKYRDRVAMVGSTAMLMGMILVGIAMVVVESAVTSIYICYAEDPLLIHRWDPEFFNQMSEMLHQRLQHRSARAREVLTHNRAALQLRSELSKEVGQSGSKQTSEAQSSCRYRSYTQTKLEMENRKRLCDDGDDGQGDHGKSHVRPFLCLHHHQDLSFSVSLTQTPNKARAVNAMLPMESATRRSRGAEAEPTVNKPLSVGAVKLLCHYQESHCWYLSFPFSIWVPLVIFSSVKWATAESERDAPGGENGGGGIEFWRGGDDTQTRFADLGELDHSATVFPHDDALDLSPSSIFSLKANNNNVAVVPNAFHYATLNTSPGCLDIGSTLSGEQQYMYQHHKGTTSSGNNGHFENWGDSAMAEHSQQTDTSTDIDTEDKNHVNSFALVPLRGAQHGALVVVDSNSIEQANGRTGDQKALRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQELQRARQQGVFVGLSGDQGHSVAGTGALTFDFEYARWLDEHQHLIHELRSAVNSHLVDNGLRIHVDSVMTHYDEIFRLKSVAVKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNQLEPLTDQQLMGICNLQQSSQQTEDALSQGMEALQQSLVDTLSSTSNGSTGSDVADYMGQMAIAMGKLATLQNFIIQADLLRQQTLQQLYRILTTRQAARALLVINDYFSRLRALSSLWMARPRD*