Information report for MELO3C013408P1
Gene Details
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Functional Annotation
- Refseq: XP_008448029.1 — PREDICTED: probable transcription factor PosF21
- Refseq: XP_008448030.1 — PREDICTED: probable transcription factor PosF21
- TrEMBL: A0A1S3BIS8 — A0A1S3BIS8_CUCME; probable transcription factor PosF21
- STRING: XP_008448029.1 — (Cucumis melo)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn340751
- Citrullus lanatus: Cla015873, Cla015874
- Citrus sinensis: orange1.1g007579m
- Cucumis sativus: Cucsa.382190.2, Cucsa.382190.1, Cucsa.382180.2, Cucsa.382180.1, Cucsa.382180.3
- Fragaria vesca: mrna01680.1-v1.0-hybrid
- Juglans regia: WALNUT_00012916-RA, WALNUT_00003890-RA
- Manihot esculenta: Manes.04G082600.1.p, Manes.11G081300.1.p
- Populus trichocarpa: Potri.009G125400.1, Potri.004G163800.1
- Sesamum indicum: XP_011088546.1
- Ziziphus jujuba: XP_015892467.1
Sequences
CDS Sequence:
- >MELO3C013408P1|Cucumis_melo|bZIP|MELO3C013408P1
ATGGGTGATACTGAAGATGCTCGTACTGATAACTTACGAAATCTTCAATGTTCGTTTGGAACATCTTCATCTTCTGCTTTAAAGTATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGACCTGCTCTCAAGGCCGTCCACAGCATTTCCAGTCGAATTTTCTTGGGGATAATAATAGACGAATTGGGATACCTCCTTGTCCTAACTCGCCGCAGGTCCCACCAATCTCACCGTATTCTCAGATCCCTGTATCCCGTCCGATGAACCAACAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGGCCCCATTTCGTGACTCCCCATCTACGTCGAATTCAGATCAGGTTTCTGCCGATACGTCAATGGAGGATAGGGATGCCAGTTCTCATTCTTTGTTGCCTCCTTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCACCTCCTGTTCTCCCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGCAAAGAGAATGCGGGAATATTTAAGCAAGCCAGCCAGTTTGTTAAAAGGGAACCTAGTTTGGAGAAAAGCATTGATAACCATTTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACTAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGCAGTGGCACAAAGACAGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTTAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCCGAGAAGAGGGAAGGAATTAAACGGACTGCTGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCTATGGATAGCTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCCGGCATTCGTCCGGGGCAACTTTCTTCAAACAACCTAGCTGACGGTAATTCAACTCCATTCAGCTTGGAATTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTAGCTGAGATTGCACTAACTGATCCTAAACGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACGCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTGCAGCGAGACTCAGTTGGACTTACAAACCAGAATAATGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTGCGGGATGCTCTAAATGAAGCGTTAACTGCTGAGGTTCAGAGATTGAAACTTGCTACAACCGATATAAACGCACAATCTCATCCCTCAAATGGGGTAATGGCTCAATCTTCTATGAACCGCCATGGACTCCAGCTTCAGCAGCAGCACCAACAACAGCAACATATGCAGCAGAATGGGAGTGCAACCACAAAACCAGAATCCAACCAATAA
Protein Sequence:
- >MELO3C013408P1|Cucumis_melo|bZIP|MELO3C013408P1
MGDTEDARTDNLRNLQCSFGTSSSSALKYHFSMDQLKISQMTCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQVPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPAPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSPPVLPFSGSGGLERSTSSKENAGIFKQASQFVKREPSLEKSIDNHLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNRHGLQLQQQHQQQQHMQQNGSATTKPESNQ*