Information report for MDP0000197219
Gene Details
|
|
Functional Annotation
- Refseq: XP_008343422.2 — common plant regulatory factor 1-like isoform X1
- Swissprot: Q99089 — CPRF1_PETCR; Common plant regulatory factor 1
- TrEMBL: A0A498KJZ8 — A0A498KJZ8_MALDO; Uncharacterized protein
- STRING: XP_008343422.1 — (Malus domestica)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_012569604.1, XP_004494783.1
- Citrus sinensis: orange1.1g014660m
- Fragaria vesca: mrna18928.1-v1.0-hybrid
- Glycine max: Glyma.03G255000.4.p, Glyma.03G255000.1.p
- Juglans regia: WALNUT_00010276-RA
- Medicago truncatula: Medtr7g116890.6, Medtr7g116890.5, Medtr7g116890.4, Medtr7g116890.3, Medtr7g116890.2, Medtr7g116890.1
- Prunus mume: XP_008233225.1
- Prunus persica: Prupe.2G182800.8.p, Prupe.2G182800.7.p, Prupe.2G182800.5.p, Prupe.2G182800.3.p, Prupe.2G182800.2.p, Prupe.2G182800.1.p
- Pyrus bretschneideri: Pbr021041.1
- Ziziphus jujuba: XP_015888834.1
Sequences
CDS Sequence:
- >MDP0000197219|Malus_domestica|bZIP|MDP0000197219
ATGGGAAACGATGATGATGCAAAGTCTGTTAAATCTGAAAAATCATATTCGCCTCTGCCGGCAGATCAGGCGAATCCTAACAATCAGACCAAYCTGCATGTCTATCCTGATTGGGCAGCCATGCAGGCTTATTATGGTCCGAGAGTTGCTCTCCCTCCATATTACAACTCAGCTATGGCTTCTGGCCACCCTCCTCATCCCTATATGTGGCCCCCACCACAGCATATGATGCCACCCTATGGGGCGCCTTATGCAGTATACTCGCATGGAGGTGTTTATGCACATCCGGCAGTTCCTCTTGCATCCCATGGTCAAGGGGGTCCATCCTTACCTGCTGCTGTGACTCCTTTGAATATGGAAACACCAACAAAGTCATCTGGTAATACAGACTGTGGGTTAATGAAAAAGTTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAGTGGTAATGTTATGAATGCCGWAGGTGGAGCTGAGYGTAGTCTCTCCCAGAGTTCTGGGACTGAAGGTTCTAGCAATGGAAGTGATGGGAATACTGCTGCGGCAAATCAAACCAGAAGAAAAAGAAGTCGTGAGGGAACACCAGCCACTGTACACAAAATCTTAAGTTCGATACARCCTKTTTTTGACACGTATTTGTGCTCAATATTTGTTCCARCAGCTGGAGAAGGGAAGACTGACATGCAGCCTGGACCAGCTGAGGAGGCAAGTGCAGCTACTGATAAAGTGTTGGGTGTAACTCTTGCTGCTGTTAGTATCCCGGGAAAATTGGTTGGACCAGCTGTTTCTCCTGGCATGACCACAGCGTTGAAACTCAAGAACTCGCCTATCTTGAACTCGAAGACAAGTCCTACCAGTGTTCCGCAATCCTGTGCAGTTTTGCCTCCGGAAACCTGGATACATGTATGCTTATGGTGGCTTGAATATGATTCACAGAATGACCGGGAGATAAAACGGGAAAGGAGGAAGCAATCTAATCGGGAATCTGCTAGAAGATCCAGGTTGAGGAAGCAGGCTGAKACTGAAGAACTTGCACGAAAGGTCGAGGCCTTATCTGCAGATAATGTGGCACTGAAATCTGAAATAAACCGGTTAACCGAGAATTCTRCTACACTGAGGCTAGAAAACACTACATTACTGGATAAACTCAAAAACGCACGCGTAGGAAGAATGGAAGACATCATCATGAACATTGATGACAAGAGGGTCCAACCTTTCAGTACCGAGAACCTACTGTCAAGAGTTAACAACGCAGGTTCTATTGCGAGGGATGCTGAGAAAGACGGTGACACTTACGAGAAAAACAATGGGACGAAGCTGCACCAACTCCTGGATGCGAGTCCAAGGGCCGATGCAGTCGTTGCTGGCTGA
Protein Sequence:
- >MDP0000197219|Malus_domestica|bZIP|MDP0000197219
MGNDDDAKSVKSEKSYSPLPADQANPNNQTNLHVYPDWAAMQAYYGPRVALPPYYNSAMASGHPPHPYMWPPPQHMMPPYGAPYAVYSHGGVYAHPAVPLASHGQGGPSLPAAVTPLNMETPTKSSGNTDCGLMKKLKGFDGLAMSIGSGNVMNAXGGAEXSLSQSSGTEGSSNGSDGNTAAANQTRRKRSREGTPATVHKILSSIQPXFDTYLCSIFVPXAGEGKTDMQPGPAEEASAATDKVLGVTLAAVSIPGKLVGPAVSPGMTTALKLKNSPILNSKTSPTSVPQSCAVLPPETWIHVCLWWLEYDSQNDREIKRERRKQSNRESARRSRLRKQAXTEELARKVEALSADNVALKSEINRLTENSXTLRLENTTLLDKLKNARVGRMEDIIMNIDDKRVQPFSTENLLSRVNNAGSIARDAEKDGDTYEKNNGTKLHQLLDASPRADAVVAG