Information report for Lus10012104
Gene Details
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Functional Annotation
- Refseq: XP_012462424.1 — PREDICTED: bZIP transcription factor 17
- TrEMBL: A0A0D2V8N8 — A0A0D2V8N8_GOSRA; Uncharacterized protein
- STRING: Lus10012104 — (Linum usitatissimum)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
- Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Literature and News
Gene Resources
Homologs
- Glycine max: Glyma.19G126800.1.p, Glyma.03G123200.1.p
- Gossypium arboreum: Cotton_A_20550_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D13G0009, Gh_A13G2071
- Juglans regia: WALNUT_00017669-RA
- Manihot esculenta: Manes.09G000300.1.p, Manes.09G000300.2.p
- Medicago truncatula: Medtr7g088890.1
- Populus trichocarpa: Potri.016G032400.1, Potri.016G032400.2
- Ricinus communis: 29940.m000398
Sequences
CDS Sequence:
- >Lus10012104|Linum_usitatissimum|bZIP|Lus10012104
ATGAATACGTCTTTACTTGGCTGTTTTATAGTTTGCGTCAAGCAAACGGCTACTCGATGTTTGCTTCCTTCTTCCTTCTTCTTATTTAATATANNNNNNNNNNACAAAACAGTGGCTGCTCCCCCCGTCGATCCAGTCGGCTTCTTCACCTCCGATCACGACGTAGGAGGTGGATTGGCCTCCGATCTAAATTCCTTCAATTTCGACGAGAATTTCGACATCGGCATCGACTTCGACGACCTAGACTCCCTCTACTTCCCTTCCGAGACCGAGTCCTTCCTTCTCCCTGACTCATCCCCCGCTGGATCGCCGAACAATGACAGTGCTGCCGCTGCTGCGGAGTCGGAGAATTCAGGAGTTTCAGGCGACGTCGTCGGGAAGTACTTCAACTGCGACTCCGATGAAGGGAGCACCGCGATGGCGGCGGCGAATTGTCGCGTGGATTCGTCTCCTGCGTCATCTCACGGATCTGGCAACGGGAGATCGACAGTTTCCGATACGGAGGCGGCGTGTTGCTCGCCTGATTCGGGGAGTAGCGAGAAGAAGAAGAAGAATGTTGTTAAGGATGAAGGGGAAGGGAACGCGAAGAGGAAGAAGGAATCCGGGAATGGGGAGCAATTGAGGAGGCAGAAATGCAGGGTGTTGGAGTTTCCGAGCTCGGTTTCGAAAGAGAGCGACGATTCGAAAGCCGAGTCTGGAAGCGTGGGGCAGCAGTTTGGTGGAGAAGACGAGAAAAAGAAGGCGAGGCTGATGAGGAATAGGGAGAGTGCTCAGCTGTCAAGGCAGAGGAAGAAGCATTACGTGGAAGAGCTGGAGGATAAGGTGAGAGCTATGCATTCCACTATAACTGATTTGAATGGGAAGATATCGTATTTCATGGCTGAGAATGCTAGCTTGAGACACCAGTTGGGGGGTGGAAATGGAGGGATGTGTCCTCCTCCCGGTATGTATCCTCCTCCGATGACACCAATGCCGTATCCATGGATGCCCTGTGCTCCTTATGTGATCAAGCCTCAGGGTTCTCAGGTGCCATTGGTTCCGATTCCTAGATTGAAACCTCAGCAGCATCAGCAGCAGCCCGCGCCGAAATCGAAGAAGGGTACTGGGGAGGGGAAGAGGTCTGAAACCAGGACTAAGAAAGTTGCTAGTGTTAGTTTTCTAGGGCTGCTGTTTTTCGTTCTGATGTTTGGTGGGTTAGTGCCGCTAGTTAATGTTAAGTATGGAGGGGTAAGTGATAGTAATGACGCGGTAAACAAGTGGTTTGGTGGCAGTGGAGGTAGGTTTTCTGATCAGAATCTCCCTGGGAGAGTGTTGGTAGTTGATGGACATAGTAATAGAACCCGTGGGAGCATCAATGGTGGTATGCACTGCGAGAAAGGAGTGAAAGGTCGTCTAGAATGTGATAAGTCGAGGGAGGGAGGTCCCAAGAATGTACCAAAAGGAAGTGGCTTTACGAGTACTGATAACTCGACTGAGCAGCTTCATGCTTCTCTATATGTGCCGAGGAATGATAAGCTTGTGAAAATTGATGGGAACTTGATAATTCACTCTGTCCTTGCTAGCGAGAAAACGAAGCGATCCCATGCCAGTGCCACGTCTACCGAGGCGAAACCTAAGGAAACGAGTCTAGCAGTCTCAAAGTATCTTTCGGCAGCTTTAGCTATCCCTGATGGAACCACGAGGAGGAGGCTGTACAGGACTACTACCGAACAGCAGAAGGCAATTGGCGGTTCTCGGTCAGCTGATAATTTAAAAGAGCAGTTCAAGTCCTCTGCAGCTGATGGTAAACTGCAGCAGTGGTTCCACCAAGGTCTTGCTGGGCCAATGCTGAGTTCGGGAGTGTGCAGCGAAGTGTTCCAGTTCGACGTATCCCCATCTCCAGGCGCCATCGTTACAGCTTCCTCGGTAACCAATCTCACCAACAAACCCCAGAATGCAACTGCTGATCATGCTCCTCCTTCCGACAAGAAGAAACACAGGAGGATCCTCCACGGCCTCCCGGTACCCTTCTCGACATCCGATCTTAACACCACCGGAGACCAACACCGCCAGAAAGGAGGGCAGAAGAACGAGACTTCGTACAATAATCCAGCAGCAGCCTCTTCTTCGATGGTCGTATCAGTGCTCGTGGATCCACGAGAAGTCGGGGACAGCGACATGGTTGCACCGAAGAAGTCGCTGTCTCGAGTCTTTGTAGTTGTGCTCGTGGACAGTGTGAAGTATGTTACCTACTCGTGCGTGCTTCCACGGTCCGGCCCTCACTTGGTAAGAGCTTGA
Protein Sequence:
- >Lus10012104|Linum_usitatissimum|bZIP|Lus10012104
MNTSLLGCFIVCVKQTATRCLLPSSFFLFNIXXXXKTVAAPPVDPVGFFTSDHDVGGGLASDLNSFNFDENFDIGIDFDDLDSLYFPSETESFLLPDSSPAGSPNNDSAAAAAESENSGVSGDVVGKYFNCDSDEGSTAMAAANCRVDSSPASSHGSGNGRSTVSDTEAACCSPDSGSSEKKKKNVVKDEGEGNAKRKKESGNGEQLRRQKCRVLEFPSSVSKESDDSKAESGSVGQQFGGEDEKKKARLMRNRESAQLSRQRKKHYVEELEDKVRAMHSTITDLNGKISYFMAENASLRHQLGGGNGGMCPPPGMYPPPMTPMPYPWMPCAPYVIKPQGSQVPLVPIPRLKPQQHQQQPAPKSKKGTGEGKRSETRTKKVASVSFLGLLFFVLMFGGLVPLVNVKYGGVSDSNDAVNKWFGGSGGRFSDQNLPGRVLVVDGHSNRTRGSINGGMHCEKGVKGRLECDKSREGGPKNVPKGSGFTSTDNSTEQLHASLYVPRNDKLVKIDGNLIIHSVLASEKTKRSHASATSTEAKPKETSLAVSKYLSAALAIPDGTTRRRLYRTTTEQQKAIGGSRSADNLKEQFKSSAADGKLQQWFHQGLAGPMLSSGVCSEVFQFDVSPSPGAIVTASSVTNLTNKPQNATADHAPPSDKKKHRRILHGLPVPFSTSDLNTTGDQHRQKGGQKNETSYNNPAAASSSMVVSVLVDPREVGDSDMVAPKKSLSRVFVVVLVDSVKYVTYSCVLPRSGPHLVRA*