Gene Details:

  • Gene ID: LOC_Os06g50310.1
  • Gene Name: LOC4342078, Os06g0716800, OsJ_22672, OSNPB_060716800, P0481E08.37, P0541C02.4
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Oryza sativa subsp. japonica
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015642505.1  — basic leucine zipper 19
  • Refseq:  XP_015642506.1  — basic leucine zipper 19
  • Swissprot:  Q8VY76  — BZP19_ARATH; Basic leucine zipper 19
  • TrEMBL:  A0A0D3GKV6  — A0A0D3GKV6_9ORYZ; Uncharacterized protein
  • TrEMBL:  A0A0E0AEE3  — A0A0E0AEE3_9ORYZ; Uncharacterized protein
  • TrEMBL:  A0A0E0HVF4  — A0A0E0HVF4_ORYNI; Uncharacterized protein
  • TrEMBL:  A0A0E0Q2P7  — A0A0E0Q2P7_ORYRU; Uncharacterized protein
  • TrEMBL:  A2YH09  — A2YH09_ORYSI; Uncharacterized protein
  • TrEMBL:  I1Q5B2  — I1Q5B2_ORYGL; Uncharacterized protein
  • TrEMBL:  Q5Z8P6  — Q5Z8P6_ORYSJ; Os06g0716800 protein
  • STRING:  OGLUM06G28970.1  — (Oryza glumipatula)
  • STRING:  ORUFI06G29500.1  — (Oryza rufipogon)
  • STRING:  OS06T0716800-01  — (Oryza sativa)
  • STRING:  ONIVA06G30110.1  — (Oryza nivara)
  • STRING:  ORGLA06G0232500.1  — (Oryza glaberrima)
  • STRING:  OBART06G27540.1  — (Oryza barthii)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0071294  — Biological Process — cellular response to zinc ion
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >LOC_Os06g50310.1|Oryza_sativa_subsp._japonica|bZIP|LOC_Os06g50310.1
    ATGGATGACGGGGACCTCGATTTCTCCAACCCGGACACATTCCTCTGCCCGGCCGTCGGTGGTGCTGACCCCGACGGCAGCTGCTCCATGGACAGCTATTTCGACGACATCCTCAAGGATACGGAGCACCATGCATGCACCCACACCCACACCTGCAACCCGCCTGTGCATGACCTCTCACACACCCACACCTGCGTCCATGTCCACACCAAGATCGTCTCCGCCCCATCCGACACTCCGTCGGATGCTGCCGAGACCGCCGAGTCCCCGACGGAGAACAATGCCTCCAAGAAGCGGCCGTCGGGTAACCGTGCCGCTGTGAGGAAGTACAGGGAGAAGAAGAAAGCTCACACTGCCTCGCTGGAGGAGGAGGTTGTTCATTTGAGGGCTCTAAACCAGCAGCTCATGAAGAAGCTCCAGAACCATGCCACGCTCGAGGCAGAGGTATCCAGGCTGCGGTGCCTGCTCGTTGATATTAGAGGAAGGATTGAAGGGGAGATTGGGGCTTTTCCTTATCAGAGGCCAGTGAAGAACATCGATTTGGTTTCTAGTGTTGATCAGGGAAGTTATCTTGGTGGTGCCCAGGTTATGAACTCCTGTGACTTTCGATGTGCCGACCAGATGTATTGCAGTCCAGGGATGCAGGTGAGAACAATGGGCGAGGATGGCGCTGTGAGTGGTCAGGTGTTGGGGCAAGGTGCCTGTGATATTGCCAGTATCCAATGCCAAGGTGCAAAATCTGGATCTGCAAAGCTCCCAGTCTGTGGGGCTATGGGTACGATGCCTGTCGGCTGTATGCCAAATTCTGAAAAGAAATGA
Protein Sequence:
  • >LOC_Os06g50310.1|Oryza_sativa_subsp._japonica|bZIP|LOC_Os06g50310.1
    MDDGDLDFSNPDTFLCPAVGGADPDGSCSMDSYFDDILKDTEHHACTHTHTCNPPVHDLSHTHTCVHVHTKIVSAPSDTPSDAAETAESPTENNASKKRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQNHATLEAEVSRLRCLLVDIRGRIEGEIGAFPYQRPVKNIDLVSSVDQGSYLGGAQVMNSCDFRCADQMYCSPGMQVRTMGEDGAVSGQVLGQGACDIASIQCQGAKSGSAKLPVCGAMGTMPVGCMPNSEKK*