Gene Details:

  • Gene ID: LOC_Os05g41070.1
  • Gene Name: LOC4339158, OJ1119_H02.18, Os05g0489700, OSNPB_050489700
  • Gene Family: bZIP Family
  • Description: bZIP Family protein
  • Species: Oryza sativa subsp. japonica
  • Source: bZIP family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015638733.1  — ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
  • Swissprot:  Q9LES3  — AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
  • TrEMBL:  Q6AVM5  — Q6AVM5_ORYSJ; BZIP transcription factor
  • STRING:  OS05T0489700-01  — (Oryza sativa)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0009737  — Biological Process — response to abscisic acid
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding

Family Introduction:

  • The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
  • Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.

Literature:

Sequences:

CDS Sequence:
  • >LOC_Os05g41070.1|Oryza_sativa_subsp._japonica|bZIP|LOC_Os05g41070.1
    ATGATTCAGGCAATGGCTTCGCATGCTGGAGGTAGTGGCGGCGGCGGCGGTGGAAGTGGCCGGGATGCTGGCTCGGCGCAGCGCGGGCCGATGCAGGGGTTGGCGAGGCAAGGGTCGCTGTATGGGCTTACACTCAATGAGGTTCAGAGCCAGTTGGGGGAGCCGTTGCTTAGTATGAACCTTGATGAGCTGCTTAAAAGCGTGTTTCCTGATGGCGCGGACCTTGACGGTGGCGGTGGCGGTGGCGGCATCGCGGGCCAGTCTCAGCCGGCCCTGGGGCTGCAGCGCCAGGGGAGCATCACGATGCCTCCGGAGCTGAGCAAGAAGACGGTGGATGAGGTGTGGAAGGGCATCCAGGATGTGCCGAAGAGGGGTGCTGAGGAGGGTGGCCGGTGGAGGCGGGAGAGGCAGCCGACCCTGGGGGAGATGACGCTTGAGGATTTCCTGGTCAAAGCTGGGGTTGTCACGGATCCGAACGATTTGCCAGGAAACATGGATGTGGTAGGGGGCGCTGCTGCGGCTGCAGCTGGTACGTCTGATTTGAATGCCGGAGCACAGTGGCTACAGCAGTATCACCAGCAGGCTTTGGAGCCCCAGCATCCAAGCATAGGTGCTCCTTACATGGCAACTCACCTGGCACCTCAGCCATTAGCTGTTGCTACAGGTGCTGTTTTGGATCCAATTTACTCCGATGGCCAGATCACTTCGCCAATGCTCGGGGCTCTTTCTGATCCTCAGACACCTGGGCGCAAACGCTGTGCCACAGGGGAGATTGCAGATAAGCTAGTAGAAAGAAGGCAGAAGAGGATGATAAAAAACAGGGAATCAGCTGCCAGGTCAAGAGCGAGGAAGCAGGCTTACACTAATGAGCTTGAAAACAAAGTTCTTCGTCTAGAAGAGGAGAATGAGAGGCTAAAGAAGCAGAAGGAGTTGGATGAGATACTGAACTCCGCGCCTCCCCCGGAACCCAAGTATCAACTCAGGCGAACAAGCTCGGCCGCCTTCTGA
Protein Sequence:
  • >LOC_Os05g41070.1|Oryza_sativa_subsp._japonica|bZIP|LOC_Os05g41070.1
    MIQAMASHAGGSGGGGGGSGRDAGSAQRGPMQGLARQGSLYGLTLNEVQSQLGEPLLSMNLDELLKSVFPDGADLDGGGGGGGIAGQSQPALGLQRQGSITMPPELSKKTVDEVWKGIQDVPKRGAEEGGRWRRERQPTLGEMTLEDFLVKAGVVTDPNDLPGNMDVVGGAAAAAAGTSDLNAGAQWLQQYHQQALEPQHPSIGAPYMATHLAPQPLAVATGAVLDPIYSDGQITSPMLGALSDPQTPGRKRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYTNELENKVLRLEEENERLKKQKELDEILNSAPPPEPKYQLRRTSSAAF*